2D gel map of spots to proteins in the PDD

2D gel maps of spots to proteins in the PDD

Map images of 2D reference gels are used in the PDD for displaying the positions of proteins when identified in a gel sample. These maps are based on published data such as that of ExPASy and other groups. The Maps may be used to interact with the database. You may use them by:

clicking on spots in a reference 2D gel map for the specified sample source to have it identify proteins in the PDD if the protein is known for that sample source map,
visualizing where proteins of interest (i.e. those found in queries to the RDBMS) appear in our reference 2D gel maps by having the RDBMS synthesize gel map images showing the spots boundaries of proteins under analysis.

The following is [*** UNDER CONSTRUCTION ***]

NIMH 2D gel plasma maps: plasma, plasmaL

1. High-resolution 2D electrophoretic gel map of the plasma proteins using the LBG/NIMH 2D gel carrier ampholytes protocol

Plasma reference gel (non-IPG): plasma
(top of gel - high MW) labeled gel map
(bottom of gel - low MW) labeled gel map

2. High-resolution 2D electrophoretic gel map of the plasma proteins using the LBG/NIMH 2D gel linear IPG protocol

[*** UNDER CONSTRUCTION ***]
Plasma reference gel (linear-IPG): plasmaL
(top of gel - high MW) labeled gel map
(bottom of gel - low MW) labeled gel map

NIMH 2D gel CSF map: csfL

High-resolution 2D electrophoretic gel (non-IPG) map of the cerebrospinal fluid proteins using the LBG/NIMH 2D gel IPG protocol

[*** UNDER CONSTRUCTION ***]
CSF reference 2D gel from NIMH: csfL
(top of gel - high MW) labeled gel map
(bottom of gel - low MW) labeled gel map

CDC 2D gel urine map: urine

High-resolution 2D electrophoretic gel map of the urine proteins from Centers for Disease Control and Prevention using the CDC 2D gel protocol

[*** UNDER CONSTRUCTION ***]
Urine reference 2D gel: urine
(top of gel - high MW) labeled gel map
(bottom of gel - low MW) labeled gel map

ExPASy 2D gel map: plasmaH

The Hochstrasser group in Geneva, Switzerland has a plasma 2D gel map of identified proteins on their ExPASy WWW server.

The ExPASy gel was labeled for some APP and other proteins for the PDD by NIMH

[*** UNDER CONSTRUCTION ***]
Plasma reference 2D IPG gel: plasmaH
(top of gel - high MW) labeled gel map
(bottom of gel - low MW) labeled gel map

ExPASy 2D gel CSF map: csfH

High-resolution 2D electrophoretic gel (IPG) map of the cerebrospinal fluid proteins.

[*** UNDER CONSTRUCTION ***]
CSF reference 2D gel from ExPASy: csfH
(top of gel - high MW) labeled gel map
(bottom of gel - low MW) labeled gel map

Click on Web browser's Back button to return to the PDD Access document.

$Date: 1997/04/16 15:45:10 $ / pdd@ncifcrf.gov