Tosatto S., Albiero A., Mantovan A., Ferrari C., Bindewald E., Toppo S.:

Align: a C++ class library and web server for rapid sequence alignment prototyping

Current Drug Discovery Technologies. 3(3):167-173 (2006).

PubMed

E. Bindewald, T.D. Schneider, B.A. Shapiro:

CorreLogo: An online server for 3D sequence logos of RNA and DNA alignments

Nucleic Acids Res. 34 (Web Server issue):W405-411 (2006).

PubMed Home Page

E. Bindewald, B.A. Shapiro:

RNA secondary structure prediction from sequence alignments using a network of k-nearest neighbor classifiers.

RNA. 12(3): 342-352 (2006).

Pubmed Home Page

W. Kasprzak, E. Bindewald, B. A. Shapiro:

Structural Polymorphism of the HIV-1 Leader Region Explored by Computational Methods.

Nucleic Acids Res. 33(22):7151-63 (2005).

PubMed

E. Bindewald, J. Skolnick:

A scoring function for docking ligands to low resoluion protein structures.

Journal of Computational Chemistry Mar; 26(4):374-383 (2005).

A. Fontana, E. Bindewald, S. Toppo, R. Velasco, G. Valle, S. Tosatto:

The SSEA Server for Protein Secondary Structure Alignment

Bioinformatics Feb 1; 21(3):393-5 (2005).

E. Bindewald, A. Cestaro, M. Heiler, J. Hesser, S. Tosatto:

MANIFOLD: Protein fold recognition based on secondary structure, sequence similarity

and enzyme classification.

Protein Eng. 16(11): 785-789 (2003).

S. Tosatto, E. Bindewald E, J. Hesser, R. Manner:

A divide and conquer approach to fast loop modeling.

Protein Eng. Apr;15(4): 279-86 (2002).

E. Bindewald:

Protein structure prediction with combinatorial optimization and fold recognition.

H. Simmler, E.Bindewald, R. Maenner:

Acceleration of Protein Energy Calculation by FPGAs.

Proc. of the Int. Conf. on Mathem. and Engineering Techniques in Medicine and Biological Sciences (METMBS'00), Las Vegas: 177-183 (2000).

E. Bindewald, J. Hesser, R. Maenner:

Protein Structure Optimization using a Combinatorial Search Algorithm.

Proc. of the Int. Conf. on Mathem. and Engineering Techniques in Medicine and Biological Sciences (METMBS'00), Las Vegas, 233-238 (2000).

E. Bindewald, J. Hesser, R. Maenner:

Implementing genetic algorithms with sterical constraints for protein structure

prediction.

Parallel Problem Solving from Nature (PPSN) V Lect Notes Comput Sc 1498: 959-967 (1998).

P.A. Rejto, E. Bindewald, D. Chandler:

Visualization of fast energy flow and solvent caging in unimolecular dynamics.

Nature 375: 129-131 (1995).

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