RNA tectonics: take a look at our RNAJunction database. It is a novel database containing RNA junctions, kissing loops, bulges and internal loops. Entries are annotated, and can be downloaded in the form of coordinate data fragments.
KNetFold : Machine learning applied to RNA secondary structure prediction.
CorreLogo: A web server generating 3D sequence logos for RNA and DNA sequence alignments.
I work in the research group of Dr.
Bruce Shapiro. A link to the web site of the group is here.
My current research involves RNA secondary structure prediction
using a machine learning approach and also visualization /
data-mining of RNA structures.
