#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 3HS2HS4
FINGERPRINT = 78:81:99:102:159:165
LOOP_LENGTH_SUM = 6
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  24
S1_NAME_ID3 = 27
S1_NUM_ID5_ORIG =  24
S1_NUM_ID3_ORIG = 27
S1_NAME2_ID5 =  25
S1_NAME2_ID3 = 26
S1_NUM2_ID5_ORIG =  25
S1_NUM2_ID3_ORIG = 26
S1_SQ2 = CG
S1_SQLEN2 = 2
S1_SQ = GCGC
S1_SQLEN = 4
S1_CHAR = T
## Properties of strand 2
S2_NAME_ID5 =  6
S2_NAME_ID3 = 11
S2_NUM_ID5_ORIG =  6
S2_NUM_ID3_ORIG = 11
S2_NAME2_ID5 =  7
S2_NAME2_ID3 = 10
S2_NUM2_ID5_ORIG =  7
S2_NUM2_ID3_ORIG = 10
S2_SQ2 = GUAG
S2_SQLEN2 = 4
S2_SQ = UGUAGC
S2_SQLEN = 6
S2_CHAR = T
## Properties of strand 3
S3_NAME_ID5 =  43
S3_NAME_ID3 = 50
S3_NUM_ID5_ORIG =  43
S3_NUM_ID3_ORIG = 50
S3_NAME2_ID5 =  44
S3_NAME2_ID3 = 49
S3_NUM2_ID5_ORIG =  44
S3_NUM2_ID3_ORIG = 49
S3_SQ2 = AGGUCG
S3_SQLEN2 = 6
S3_SQ = GAGGUCGG
S3_SQLEN = 8
S3_CHAR = T
## Properties of strand 4
S4_NAME_ID5 =  64
S4_NAME_ID3 = 67
S4_NUM_ID5_ORIG =  64
S4_NUM_ID3_ORIG = 67
S4_NAME2_ID5 =  65
S4_NAME2_ID3 = 66
S4_NUM2_ID5_ORIG =  65
S4_NUM2_ID3_ORIG = 66
S4_SQ2 = UC
S4_SQLEN2 = 2
S4_SQ = CUCA
S4_SQLEN = 4
S4_CHAR = T
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 2
H1_OUTID2 = 5
H1_INID2_ORIG = 25
H1_OUTID2_ORIG = 10
H1_INSEQ_CHAR = T
H1_OUTSEQ_CHAR = T
# Position:
H1_P_X = 41.965591153262196
H1_P_Y = 107.23336469178648
H1_P_Z = 92.18253944489251
# Orientation:
H1_DX_X = -0.030247686459503598
H1_DX_Y = -0.9980539517548976
H1_DX_Z = 0.05452877084883312
H1_DY_X = -0.9948705349602562
H1_DY_Y = 0.035329859445951683
H1_DY_Z = 0.09478617884178675
H1_DZ_X = -0.09652821417464708
H1_DZ_Y = -0.051382004806797
H1_DZ_Z = -0.9940031154127666
## Properties of helix 2
H2_INID = 1
H2_OUTID = 4
H2_INID2 = 2
H2_OUTID2 = 3
H2_INID2_ORIG = 44
H2_OUTID2_ORIG = 26
H2_INSEQ_CHAR = T
H2_OUTSEQ_CHAR = T
# Position:
H2_P_X = 38.994059815845254
H2_P_Y = 107.86496425495535
H2_P_Z = 106.29047184840877
# Orientation:
H2_DX_X = 0.681505592068703
H2_DX_Y = -0.6832759918866174
H2_DX_Z = -0.2620764142200471
H2_DY_X = 0.7301691008662843
H2_DY_Y = 0.6588656449139734
H2_DY_Z = 0.18096725143574588
H2_DZ_X = 0.04902256744807687
H2_DZ_Y = -0.31469029356406963
H2_DZ_Z = 0.9479276380701975
## Properties of helix 3
H3_INID = 1
H3_OUTID = 8
H3_INID2 = 2
H3_OUTID2 = 7
H3_INID2_ORIG = 65
H3_OUTID2_ORIG = 49
H3_INSEQ_CHAR = T
H3_OUTSEQ_CHAR = T
# Position:
H3_P_X = 45.14258402365531
H3_P_Y = 105.6620423717893
H3_P_Z = 71.36510973989476
# Orientation:
H3_DX_X = 0.7551972963348774
H3_DX_Y = -0.2690599628492123
H3_DX_Z = 0.5977321975601484
H3_DY_X = 0.5925001441766966
H3_DY_Y = -0.10986913461127301
H3_DY_Z = -0.7980428261756174
H3_DZ_X = 0.2803936924381176
H3_DZ_Y = 0.9568361979207083
H3_DZ_Z = 0.07644519337124223
## Properties of helix 4
H4_INID = 1
H4_OUTID = 4
H4_INID2 = 2
H4_OUTID2 = 3
H4_INID2_ORIG = 7
H4_OUTID2_ORIG = 66
H4_INSEQ_CHAR = T
H4_OUTSEQ_CHAR = T
# Position:
H4_P_X = 41.53046001919781
H4_P_Y = 93.60592403568623
H4_P_Z = 70.0061819916584
# Orientation:
H4_DX_X = 0.7613660179444253
H4_DX_Y = -0.118123781897296
H4_DX_Z = 0.6374704376437563
H4_DY_X = -0.6478437153379559
H4_DY_Y = -0.1008448495638703
H4_DY_Z = 0.755068762970339
H4_DZ_X = -0.02490596748896934
H4_DZ_Y = -0.9878649140782017
H4_DZ_Z = -0.15330559127676224
#############  END of Description of junction: j1