#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 3HS2HS4
FINGERPRINT = 68:89:99:104:156:172
LOOP_LENGTH_SUM = 6
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  923
S1_NAME_ID3 = 926
S1_NUM_ID5_ORIG =  923
S1_NUM_ID3_ORIG = 926
S1_NAME2_ID5 =  924
S1_NAME2_ID3 = 925
S1_NUM2_ID5_ORIG =  924
S1_NUM2_ID3_ORIG = 925
S1_SQ2 = CG
S1_SQLEN2 = 2
S1_SQ = GCGC
S1_SQLEN = 4
S1_CHAR = C
## Properties of strand 2
S2_NAME_ID5 =  906
S2_NAME_ID3 = 911
S2_NUM_ID5_ORIG =  906
S2_NUM_ID3_ORIG = 911
S2_NAME2_ID5 =  907
S2_NAME2_ID3 = 910
S2_NUM2_ID5_ORIG =  907
S2_NUM2_ID3_ORIG = 910
S2_SQ2 = CUAG
S2_SQLEN2 = 4
S2_SQ = GCUAGC
S2_SQLEN = 6
S2_CHAR = C
## Properties of strand 3
S3_NAME_ID5 =  942
S3_NAME_ID3 = 949
S3_NUM_ID5_ORIG =  942
S3_NUM_ID3_ORIG = 949
S3_NAME2_ID5 =  943
S3_NAME2_ID3 = 948
S3_NUM2_ID5_ORIG =  943
S3_NUM2_ID3_ORIG = 948
S3_SQ2 = AGGUCG
S3_SQLEN2 = 6
S3_SQ = GAGGUCGU
S3_SQLEN = 8
S3_CHAR = C
## Properties of strand 4
S4_NAME_ID5 =  963
S4_NAME_ID3 = 966
S4_NUM_ID5_ORIG =  963
S4_NUM_ID3_ORIG = 966
S4_NAME2_ID5 =  964
S4_NAME2_ID3 = 965
S4_NUM2_ID5_ORIG =  964
S4_NUM2_ID3_ORIG = 965
S4_SQ2 = CG
S4_SQLEN2 = 2
S4_SQ = ACGC
S4_SQLEN = 4
S4_CHAR = C
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 2
H1_OUTID2 = 5
H1_INID2_ORIG = 924
H1_OUTID2_ORIG = 910
H1_INSEQ_CHAR = C
H1_OUTSEQ_CHAR = C
# Position:
H1_P_X = 100.94582370996498
H1_P_Y = 71.68831036763058
H1_P_Z = 25.700443364123185
# Orientation:
H1_DX_X = -0.8168857654288644
H1_DX_Y = -0.1569104501268157
H1_DX_Z = 0.5550466258619196
H1_DY_X = -0.34257053716858366
H1_DY_Y = -0.6422041567005436
H1_DY_Z = -0.6857253445663005
H1_DZ_X = 0.46405072277040915
H1_DZ_Y = -0.7503018937451316
H1_DZ_Z = 0.4708545369206121
## Properties of helix 2
H2_INID = 1
H2_OUTID = 4
H2_INID2 = 2
H2_OUTID2 = 3
H2_INID2_ORIG = 943
H2_OUTID2_ORIG = 925
H2_INSEQ_CHAR = C
H2_OUTSEQ_CHAR = C
# Position:
H2_P_X = 94.37398431436029
H2_P_Y = 79.03642394432124
H2_P_Z = 15.247828418248629
# Orientation:
H2_DX_X = -0.3875665599083078
H2_DX_Y = 0.15420103318459155
H2_DX_Z = 0.9088532351296639
H2_DY_X = 0.5027486876552842
H2_DY_Y = 0.8617395012036724
H2_DY_Z = 0.06818202934883288
H2_DZ_X = -0.7726809941377724
H2_DZ_Y = 0.4833498457950043
H2_DZ_Z = -0.4115057810872429
## Properties of helix 3
H3_INID = 1
H3_OUTID = 8
H3_INID2 = 2
H3_OUTID2 = 7
H3_INID2_ORIG = 964
H3_OUTID2_ORIG = 948
H3_INSEQ_CHAR = C
H3_OUTSEQ_CHAR = C
# Position:
H3_P_X = 113.33481946374208
H3_P_Y = 60.88874927805789
H3_P_Z = 38.03573380527366
# Orientation:
H3_DX_X = -0.3970993884472591
H3_DX_Y = 0.7780509065523589
H3_DX_Z = 0.48677393367750454
H3_DY_X = 0.5326345369640819
H3_DY_Y = -0.23655373077124153
H3_DY_Z = 0.8126147811178868
H3_DZ_X = 0.7474038571802168
H3_DZ_Y = 0.5819614413956131
H3_DZ_Z = -0.32048144252183164
## Properties of helix 4
H4_INID = 1
H4_OUTID = 4
H4_INID2 = 2
H4_OUTID2 = 3
H4_INID2_ORIG = 907
H4_OUTID2_ORIG = 965
H4_INSEQ_CHAR = C
H4_OUTSEQ_CHAR = C
# Position:
H4_P_X = 104.85798090778736
H4_P_Y = 53.733557335764104
H4_P_Z = 41.97574027654366
# Orientation:
H4_DX_X = -0.5062089398850986
H4_DX_Y = 0.7548259543930698
H4_DX_Z = 0.41712143046719063
H4_DY_X = -0.5680786996883143
H4_DY_Y = 0.07206309209624351
H4_DY_Z = -0.819813089501487
H4_DZ_X = -0.6488752577659653
H4_DZ_Y = -0.6519545147723989
H4_DZ_Z = 0.3923215652077161
#############  END of Description of junction: j1