#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 3HS2HS4
FINGERPRINT = 77:91:92:100:164:168
LOOP_LENGTH_SUM = 6
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  24
S1_NAME_ID3 = 27
S1_NUM_ID5_ORIG =  24
S1_NUM_ID3_ORIG = 27
S1_NAME2_ID5 =  25
S1_NAME2_ID3 = 26
S1_NUM2_ID5_ORIG =  25
S1_NUM2_ID3_ORIG = 26
S1_SQ2 = CA
S1_SQLEN2 = 2
S1_SQ = GCAC
S1_SQLEN = 4
S1_CHAR = B
## Properties of strand 2
S2_NAME_ID5 =  6
S2_NAME_ID3 = 11
S2_NUM_ID5_ORIG =  6
S2_NUM_ID3_ORIG = 11
S2_NAME2_ID5 =  7
S2_NAME2_ID3 = 10
S2_NUM2_ID5_ORIG =  7
S2_NUM2_ID3_ORIG = 10
S2_SQ2 = AUCG
S2_SQLEN2 = 4
S2_SQ = UAUCGC
S2_SQLEN = 6
S2_CHAR = B
## Properties of strand 3
S3_NAME_ID5 =  43
S3_NAME_ID3 = 50
S3_NUM_ID5_ORIG =  43
S3_NUM_ID3_ORIG = 50
S3_NAME2_ID5 =  44
S3_NAME2_ID3 = 49
S3_NUM2_ID5_ORIG =  44
S3_NUM2_ID3_ORIG = 49
S3_SQ2 = CAUUCC
S3_SQLEN2 = 6
S3_SQ = GCAUUCCG
S3_SQLEN = 8
S3_CHAR = B
## Properties of strand 4
S4_NAME_ID5 =  64
S4_NAME_ID3 = 67
S4_NUM_ID5_ORIG =  64
S4_NUM_ID3_ORIG = 67
S4_NAME2_ID5 =  65
S4_NAME2_ID3 = 66
S4_NUM2_ID5_ORIG =  65
S4_NUM2_ID3_ORIG = 66
S4_SQ2 = GU
S4_SQLEN2 = 2
S4_SQ = CGUA
S4_SQLEN = 4
S4_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 2
H1_OUTID2 = 5
H1_INID2_ORIG = 25
H1_OUTID2_ORIG = 10
H1_INSEQ_CHAR = B
H1_OUTSEQ_CHAR = B
# Position:
H1_P_X = 19.98306790931295
H1_P_Y = 19.623666329966383
H1_P_Z = 29.503310343282813
# Orientation:
H1_DX_X = 0.9809704138881798
H1_DX_Y = -0.07637117343368516
H1_DX_Z = 0.178506277044864
H1_DY_X = 0.17505832534839527
H1_DY_Y = -0.0497356638531663
H1_DY_Z = -0.9833010456962299
H1_DZ_X = 0.08397398288917657
H1_DZ_Y = 0.9958382436969586
H1_DZ_Z = -0.03541980502885167
## Properties of helix 2
H2_INID = 1
H2_OUTID = 4
H2_INID2 = 2
H2_OUTID2 = 3
H2_INID2_ORIG = 44
H2_OUTID2_ORIG = 26
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = B
# Position:
H2_P_X = 17.38714709407192
H2_P_Y = 6.530265958049313
H2_P_Z = 25.031226900902013
# Orientation:
H2_DX_X = 0.6910344579809866
H2_DX_Y = 0.06397521542119566
H2_DX_Z = 0.7199851038005818
H2_DY_X = -0.7123688568626143
H2_DY_Y = -0.10850830535042988
H2_DY_Z = 0.693366107797484
H2_DZ_X = 0.12248260960305402
H2_DZ_Y = -0.9920348378367514
H2_DZ_Z = -0.029409026897134538
## Properties of helix 3
H3_INID = 1
H3_OUTID = 8
H3_INID2 = 2
H3_OUTID2 = 7
H3_INID2_ORIG = 65
H3_OUTID2_ORIG = 49
H3_INSEQ_CHAR = B
H3_OUTSEQ_CHAR = B
# Position:
H3_P_X = 20.610372014130512
H3_P_Y = 38.853953345892954
H3_P_Z = 36.8866292685648
# Orientation:
H3_DX_X = 0.11824499486408158
H3_DX_Y = -0.720908319549352
H3_DX_Z = 0.6828684470629156
H3_DY_X = 0.005343529898247823
H3_DY_Y = 0.6881449951415064
H3_DY_Z = 0.725553521354513
H3_DZ_X = -0.9929700740091931
H3_DZ_Y = -0.08214414444272933
H3_DZ_Z = 0.0852218965756606
## Properties of helix 4
H4_INID = 1
H4_OUTID = 4
H4_INID2 = 2
H4_OUTID2 = 3
H4_INID2_ORIG = 7
H4_OUTID2_ORIG = 66
H4_INSEQ_CHAR = B
H4_OUTSEQ_CHAR = B
# Position:
H4_P_X = 34.62505713170538
H4_P_Y = 39.28009787474586
H4_P_Z = 36.16935094606374
# Orientation:
H4_DX_X = -0.15805778129153225
H4_DX_Y = -0.7707526542450651
H4_DX_Z = 0.6172180196230386
H4_DY_X = 0.030202615513033493
H4_DY_Y = -0.6285564927839999
H4_DY_Z = -0.7771772882652002
H4_DZ_X = 0.9869678514467282
H4_DZ_Y = -0.10419731931897758
H4_DZ_Z = 0.12262699073763628
#############  END of Description of junction: j1