#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 39:64:73:80:109:110:117:118:127:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.34954995805657
H1_P_Y = 45.04646059164891
H1_P_Z = 9.529484630878228
# Orientation:
H1_DX_X = -0.14624504089169932
H1_DX_Y = 0.8026692740014525
H1_DX_Z = 0.5782165896863987
H1_DY_X = -0.9364382747593822
H1_DY_Y = 0.07609429954147373
H1_DY_Z = -0.3424806784958161
H1_DZ_X = -0.3188977039432075
H1_DZ_Y = -0.5915502465144229
H1_DZ_Z = 0.7405218162002196
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.2084948528202
H2_P_Y = 70.76389356241027
H2_P_Z = -0.016145531808912317
# Orientation:
H2_DX_X = 0.8262723012896345
H2_DX_Y = -0.4192266213548521
H2_DX_Z = 0.37619559283556725
H2_DY_X = 0.37883059053206125
H2_DY_Y = -0.08065856407716865
H2_DY_Z = -0.9219444558747096
H2_DZ_X = 0.4168470556434727
H2_DZ_Y = 0.9042915658062896
H2_DZ_Z = 0.09216993117587498
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 134.03612554390463
H3_P_Y = 50.08833221603133
H3_P_Z = -6.749929583078837
# Orientation:
H3_DX_X = 0.6129186225592775
H3_DX_Y = 0.4679583467026802
H3_DX_Z = -0.636667690299527
H3_DY_X = -0.22566854410993642
H3_DY_Y = -0.6685247426761833
H3_DY_Z = -0.708624284532406
H3_DZ_X = -0.75723475245087
H3_DZ_Y = 0.5780048911393791
H3_DZ_Z = -0.30414778562339695
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 145.0169929325173
H4_P_Y = 38.32757325679227
H4_P_Z = -1.978906569319662
# Orientation:
H4_DX_X = 0.4372506601886528
H4_DX_Y = 0.6686719201141571
H4_DX_Z = 0.6014064544178397
H4_DY_X = -0.6277477724117659
H4_DY_Y = -0.2519382064748825
H4_DY_Z = 0.7365187535631945
H4_DZ_X = 0.6440066726336227
H4_DZ_Y = -0.6995748733116898
H4_DZ_Z = 0.3095971612180699
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.02993677963462
H5_P_Y = 55.99685865425561
H5_P_Z = 11.419970464883493
# Orientation:
H5_DX_X = -0.36553212028749726
H5_DX_Y = 0.5743378610827037
H5_DX_Z = 0.7324768189950248
H5_DY_X = 0.26629367632193635
H5_DY_Y = -0.6895144763252006
H5_DY_Z = 0.6735409897615323
H5_DZ_X = 0.8918934616808656
H5_DZ_Y = 0.4412548110388528
H5_DZ_Z = 0.09909714802147285
#############  END of Description of junction: j1