#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 37:66:72:81:107:107:116:119:128:172
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.45018606686253
H1_P_Y = 45.04284902145504
H1_P_Z = 9.513866134987532
# Orientation:
H1_DX_X = -0.158144177184397
H1_DX_Y = 0.8085929438640349
H1_DX_Z = 0.5667167461404023
H1_DY_X = -0.9260397010998247
H1_DY_Y = 0.07773942914149501
H1_DY_Z = -0.36933325485759205
H1_DZ_X = -0.3426965001420683
H1_DZ_Y = -0.5832101099004134
H1_DZ_Z = 0.7364951299909102
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.402625077668
H2_P_Y = 70.91485828043899
H2_P_Z = -0.30653021120164947
# Orientation:
H2_DX_X = 0.8277145127884751
H2_DX_Y = -0.4222403456316357
H2_DX_Z = 0.36959677466154506
H2_DY_X = 0.3668531434866793
H2_DY_Y = -0.09123018266554084
H2_DY_Z = -0.9257946991016718
H2_DZ_X = 0.4246262549976052
H2_DZ_Y = 0.9018814469162209
H2_DZ_Z = 0.0793876519052471
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 134.00486774662636
H3_P_Y = 50.1399898405069
H3_P_Z = -6.693601734051441
# Orientation:
H3_DX_X = 0.6031626662707765
H3_DX_Y = 0.4829226899262693
H3_DX_Z = -0.6348074303058251
H3_DY_X = -0.21321246235027047
H3_DY_Y = -0.669297895896463
H3_DY_Z = -0.711744878764236
H3_DZ_X = -0.7685930287971985
H3_DZ_Y = 0.5646467941137772
H3_DZ_Z = -0.3007303675743378
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 145.27768482333553
H4_P_Y = 38.33787854782521
H4_P_Z = -2.011431307871721
# Orientation:
H4_DX_X = 0.4010750361113935
H4_DX_Y = 0.6983896074044367
H4_DX_Z = 0.5927822295562786
H4_DY_X = -0.625554694253367
H4_DY_Y = -0.26391829044156623
H4_DY_Z = 0.7341855763143164
H4_DZ_X = 0.6691936490327919
H4_DZ_Y = -0.6652812129016397
H4_DZ_Z = 0.3310298594602967
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.19704555455974
H5_P_Y = 56.234903445744536
H5_P_Z = 11.467060604720947
# Orientation:
H5_DX_X = -0.40443067450362946
H5_DX_Y = 0.5629179397906228
H5_DX_Z = 0.7208045661498197
H5_DY_X = 0.2671082282533064
H5_DY_Y = -0.6810719634890177
H5_DY_Z = 0.6817581498952539
H5_DZ_X = 0.8746936743339973
H5_DZ_Y = 0.46825673899165565
H5_DZ_Z = 0.1250863800298827
#############  END of Description of junction: j1