#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS5HS2
FINGERPRINT = 40:66:70:80:108:109:117:119:127:171
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  97
S1_NAME_ID3 = 107
S1_NUM_ID5_ORIG =  97
S1_NUM_ID3_ORIG = 107
S1_NAME2_ID5 =  99
S1_NAME2_ID3 = 105
S1_NUM2_ID5_ORIG =  99
S1_NUM2_ID3_ORIG = 105
S1_SQ2 = CGGACGG
S1_SQLEN2 = 7
S1_SQ = GGCGGACGGGU
S1_SQLEN = 11
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 63
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 63
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 61
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 61
S2_SQ2 = CAAG
S2_SQLEN2 = 4
S2_SQ = UGCAAGUC
S2_SQLEN = 8
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  308
S3_NAME_ID3 = 313
S3_NUM_ID5_ORIG =  308
S3_NUM_ID3_ORIG = 313
S3_NAME2_ID5 =  310
S3_NAME2_ID3 = 311
S3_NUM2_ID5_ORIG =  310
S3_NUM2_ID3_ORIG = 311
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  330
S4_NAME_ID3 = 335
S4_NUM_ID5_ORIG =  330
S4_NUM_ID3_ORIG = 335
S4_NAME2_ID5 =  332
S4_NAME2_ID3 = 333
S4_NUM2_ID5_ORIG =  332
S4_NUM2_ID3_ORIG = 333
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  344
S5_NAME_ID3 = 351
S5_NUM_ID5_ORIG =  344
S5_NUM_ID3_ORIG = 351
S5_NAME2_ID5 =  346
S5_NAME2_ID3 = 349
S5_NUM2_ID5_ORIG =  346
S5_NUM2_ID3_ORIG = 349
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 99
H1_OUTID2_ORIG = 61
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 95.25510016734479
H1_P_Y = 185.29585562564165
H1_P_Z = 161.29957249543702
# Orientation:
H1_DX_X = 0.7081222617676985
H1_DX_Y = -0.601034987180185
H1_DX_Z = 0.3705668719331925
H1_DY_X = 0.6862162732905688
H1_DY_Y = 0.4621616334532632
H1_DY_Z = -0.5617061961871173
H1_DZ_X = 0.16634328558807
H1_DZ_Y = 0.6520456799558758
H1_DZ_Z = 0.739706930203198
## Properties of helix 2
H2_INID = 1
H2_OUTID = 11
H2_INID2 = 3
H2_OUTID2 = 9
H2_INID2_ORIG = 310
H2_OUTID2_ORIG = 105
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 86.05776489318929
H2_P_Y = 153.6552506794177
H2_P_Z = 150.84595721997368
# Orientation:
H2_DX_X = -0.918488896845858
H2_DX_Y = 0.17828865859769394
H2_DX_Z = 0.3529749291186306
H2_DY_X = -0.36362210560888286
H2_DY_Y = -0.02995319091101578
H2_DY_Z = -0.9310648584641115
H2_DZ_X = -0.15542557924432288
H2_DZ_Y = -0.983522221695921
H2_DZ_Z = 0.09234137072235171
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 332
H3_OUTID2_ORIG = 311
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 77.8511235650801
H3_P_Y = 172.83584855031143
H3_P_Z = 144.2313159682101
# Orientation:
H3_DX_X = -0.45846511597981987
H3_DX_Y = -0.6268838337852856
H3_DX_Z = -0.6299415817107956
H3_DY_X = 0.02745265071351355
H3_DY_Y = 0.6984969843414319
H3_DY_Z = -0.715086228950554
H3_DZ_X = 0.8882882918278341
H3_DZ_Y = -0.3451356571040094
H3_DZ_Z = -0.303026878010769
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 346
H4_OUTID2_ORIG = 333
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 63.75244909378188
H4_P_Y = 181.16201508346188
H4_P_Z = 148.41958200147093
# Orientation:
H4_DX_X = -0.22576145346098286
H4_DX_Y = -0.763869175138268
H4_DX_Z = 0.604595442758864
H4_DY_X = 0.5328449995078444
H4_DY_Y = 0.422728090682682
H4_DY_Z = 0.7330601393113909
H4_DZ_X = -0.8155415210954402
H4_DZ_Y = 0.4876523809245441
H4_DZ_Z = 0.3115881620792891
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 349
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 71.60296239532788
H5_P_Y = 165.1225197168068
H5_P_Z = 161.74475316144435
# Orientation:
H5_DX_X = 0.5090851511461665
H5_DX_Y = -0.44025169542672415
H5_DX_Z = 0.7396017533486372
H5_DY_X = -0.4233225408416388
H5_DY_Y = 0.6201064952193747
H5_DY_Z = 0.6605043232274284
H5_DZ_X = -0.7494199992646884
H5_DZ_Y = -0.6493430366614064
H5_DZ_Z = 0.12931854252758512
#############  END of Description of junction: j1