#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS5HS2
FINGERPRINT = 38:66:72:81:107:109:117:118:127:170
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  97
S1_NAME_ID3 = 107
S1_NUM_ID5_ORIG =  97
S1_NUM_ID3_ORIG = 107
S1_NAME2_ID5 =  99
S1_NAME2_ID3 = 105
S1_NUM2_ID5_ORIG =  99
S1_NUM2_ID3_ORIG = 105
S1_SQ2 = CGGACGG
S1_SQLEN2 = 7
S1_SQ = GGCGGACGGGU
S1_SQLEN = 11
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 63
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 63
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 61
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 61
S2_SQ2 = CAAG
S2_SQLEN2 = 4
S2_SQ = UGCAAGUC
S2_SQLEN = 8
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  308
S3_NAME_ID3 = 313
S3_NUM_ID5_ORIG =  308
S3_NUM_ID3_ORIG = 313
S3_NAME2_ID5 =  310
S3_NAME2_ID3 = 311
S3_NUM2_ID5_ORIG =  310
S3_NUM2_ID3_ORIG = 311
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  330
S4_NAME_ID3 = 335
S4_NUM_ID5_ORIG =  330
S4_NUM_ID3_ORIG = 335
S4_NAME2_ID5 =  332
S4_NAME2_ID3 = 333
S4_NUM2_ID5_ORIG =  332
S4_NUM2_ID3_ORIG = 333
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  344
S5_NAME_ID3 = 351
S5_NUM_ID5_ORIG =  344
S5_NUM_ID3_ORIG = 351
S5_NAME2_ID5 =  346
S5_NAME2_ID3 = 349
S5_NUM2_ID5_ORIG =  346
S5_NUM2_ID3_ORIG = 349
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 99
H1_OUTID2_ORIG = 61
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 95.44693287231975
H1_P_Y = 185.54431918564694
H1_P_Z = 161.20530597251295
# Orientation:
H1_DX_X = 0.7074015558270474
H1_DX_Y = -0.6072439638145113
H1_DX_Z = 0.3617150912311047
H1_DY_X = 0.6850662544867134
H1_DY_Y = 0.463088902849762
H1_DY_Z = -0.5623458855730803
H1_DZ_X = 0.1739748998477637
H1_DZ_Y = 0.6456031571083543
H1_DZ_Z = 0.7435921582122091
## Properties of helix 2
H2_INID = 1
H2_OUTID = 11
H2_INID2 = 3
H2_OUTID2 = 9
H2_INID2_ORIG = 310
H2_OUTID2_ORIG = 105
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 86.00127032113785
H2_P_Y = 153.80428418144388
H2_P_Z = 150.51902587139196
# Orientation:
H2_DX_X = -0.9048566450411215
H2_DX_Y = 0.20887273862598477
H2_DX_Z = 0.3709536776792959
H2_DY_X = -0.3818357724698842
H2_DY_Y = -0.012895027662523262
H2_DY_Z = -0.924140228062754
H2_DZ_X = -0.18824424237472215
H2_DZ_Y = -0.9778578103796463
H2_DZ_Z = 0.09142323496959648
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 332
H3_OUTID2_ORIG = 311
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 77.96639833556554
H3_P_Y = 172.94427285281412
H3_P_Z = 144.17238454539444
# Orientation:
H3_DX_X = -0.4560072495250864
H3_DX_Y = -0.6159747086859397
H3_DX_Z = -0.6423648080645705
H3_DY_X = 0.04903250555049965
H3_DY_Y = 0.7032928647519441
H3_DY_Z = -0.7092072756172456
H3_DZ_X = 0.8886243310758459
H3_DZ_Y = -0.3549004151142867
H3_DZ_Z = -0.29050386154352736
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 346
H4_OUTID2_ORIG = 333
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 63.80037859077905
H4_P_Y = 181.32249665251277
H4_P_Z = 148.55088287329357
# Orientation:
H4_DX_X = -0.2517985958381814
H4_DX_Y = -0.7420108630453512
H4_DX_Z = 0.6213029424174863
H4_DY_X = 0.5347479494415097
H4_DY_Y = 0.4284091618615662
H4_DY_Z = 0.7283613255803232
H4_DZ_X = -0.8066238886259214
H4_DZ_Y = 0.515640833483701
H4_DZ_Z = 0.2889159620758903
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 349
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 71.68442468772304
H5_P_Y = 165.33506556144684
H5_P_Z = 161.72844604852258
# Orientation:
H5_DX_X = 0.5084016655415269
H5_DX_Y = -0.44149840732572443
H5_DX_Z = 0.7393286838771189
H5_DY_X = -0.42128107333125797
H5_DY_Y = 0.6212846865767006
H5_DY_Z = 0.6607023501381946
H5_DZ_X = -0.7510326249421411
H5_DZ_Y = -0.6473673567257947
H5_DZ_Z = 0.12986724651881332
#############  END of Description of junction: j1