#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 35:66:71:84:105:106:116:118:127:171
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.63237276813146
H1_P_Y = 44.794986106172104
H1_P_Z = 9.505011603922787
# Orientation:
H1_DX_X = -0.12682156211003814
H1_DX_Y = 0.8232701499737232
H1_DX_Z = 0.5533015014855884
H1_DY_X = -0.9331411585289828
H1_DY_Y = 0.09015192432245556
H1_DY_Z = -0.34802328772676283
H1_DZ_X = -0.3363983793705927
H1_DZ_Y = -0.560445261112271
H1_DZ_Z = 0.7567940536590125
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.7308124714151
H2_P_Y = 70.971754948525
H2_P_Z = -0.5712532287610945
# Orientation:
H2_DX_X = 0.8154584961379214
H2_DX_Y = -0.46165469735856846
H2_DX_Z = 0.34914521546664645
H2_DY_X = 0.3393641730764614
H2_DY_Y = -0.10731707096613263
H2_DY_Z = -0.9345132445885243
H2_DZ_X = 0.468891670973818
H2_DZ_Y = 0.8805441423835703
H2_DZ_Z = 0.06915644731597559
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 134.1904201840766
H3_P_Y = 50.135687617813
H3_P_Z = -7.178178744771996
# Orientation:
H3_DX_X = 0.5940238813703331
H3_DX_Y = 0.47029865769793133
H3_DX_Z = -0.6526521285717735
H3_DY_X = -0.22552727009991713
H3_DY_Y = -0.6814095190594642
H3_DY_Z = -0.6962891050249418
H3_DZ_X = -0.7721872045061389
H3_DZ_Y = 0.5608032096044653
H3_DZ_Z = -0.2987083549121241
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 145.16749694398536
H4_P_Y = 38.49415913173462
H4_P_Z = -2.679343830840557
# Orientation:
H4_DX_X = 0.42110743750407664
H4_DX_Y = 0.6915528439000482
H4_DX_Z = 0.5868757876863944
H4_DY_X = -0.6215979519903669
H4_DY_Y = -0.25116032637100716
H4_DY_Z = 0.741980105217523
H4_DZ_X = 0.6605183662549905
H4_DZ_Y = -0.6772541284857354
H4_DZ_Z = 0.3241023500205813
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.62802996563926
H5_P_Y = 56.00008862132146
H5_P_Z = 10.950787531578749
# Orientation:
H5_DX_X = -0.39834704441472013
H5_DX_Y = 0.546371286245197
H5_DX_Z = 0.7367482947199893
H5_DY_X = 0.25420915980350856
H5_DY_Y = -0.706000423698228
H5_DY_Z = 0.6610152076994353
H5_DZ_X = 0.8813043374896381
H5_DZ_Y = 0.4506016192876956
H5_DZ_Z = 0.14234059651857756
#############  END of Description of junction: j1