#############  Start of Description of junction: j41
# Number of strands:
NUM_STRANDS = 4
LILLEY = 2HS14HS12HS4
FINGERPRINT = 24:50:66:135:140:145
LOOP_LENGTH_SUM = 30
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  1721
S1_NAME_ID3 = 1726
S1_NUM_ID5_ORIG =  1721
S1_NUM_ID3_ORIG = 1726
S1_NAME2_ID5 =  1723
S1_NAME2_ID3 = 1724
S1_NUM2_ID5_ORIG =  1723
S1_NUM2_ID3_ORIG = 1724
S1_SQ2 = UC
S1_SQLEN2 = 2
S1_SQ = GGUCCC
S1_SQLEN = 6
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  1682
S2_NAME_ID3 = 1701
S2_NUM_ID5_ORIG =  1682
S2_NUM_ID3_ORIG = 1701
S2_NAME2_ID5 =  1684
S2_NAME2_ID3 = 1699
S2_NUM2_ID5_ORIG =  1684
S2_NUM2_ID3_ORIG = 1699
S2_SQ2 = GAACUUUGCAAUCUCA
S2_SQLEN2 = 16
S2_SQ = AGGAACUUUGCAAUCUCACC
S2_SQLEN = 20
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  1740
S3_NAME_ID3 = 1757
S3_NUM_ID5_ORIG =  1740
S3_NUM_ID3_ORIG = 1757
S3_NAME2_ID5 =  1742
S3_NAME2_ID3 = 1755
S3_NUM2_ID5_ORIG =  1742
S3_NUM2_ID3_ORIG = 1755
S3_SQ2 = GCGCAGUGAAUAGG
S3_SQLEN2 = 14
S3_SQ = GGGCGCAGUGAAUAGGCC
S3_SQLEN = 18
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  1969
S4_NAME_ID3 = 1978
S4_NUM_ID5_ORIG =  1969
S4_NUM_ID3_ORIG = 1978
S4_NAME2_ID5 =  1971
S4_NAME2_ID3 = 1976
S4_NUM2_ID5_ORIG =  1971
S4_NUM2_ID3_ORIG = 1976
S4_SQ2 = CGCUGU
S4_SQLEN2 = 6
S4_SQ = GGCGCUGUCU
S4_SQLEN = 10
S4_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 20
H1_INID2 = 3
H1_OUTID2 = 18
H1_INID2_ORIG = 1723
H1_OUTID2_ORIG = 1699
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 68.55849366708048
H1_P_Y = 135.6407500379908
H1_P_Z = 167.52561650377314
# Orientation:
H1_DX_X = -0.45971650251516394
H1_DX_Y = 0.5809798259567742
H1_DX_Z = 0.6716570398250212
H1_DY_X = 0.6648225334020168
H1_DY_Y = -0.27628996658512506
H1_DY_Z = 0.6940279918312342
H1_DZ_X = 0.5887883629931423
H1_DZ_Y = 0.7655888558460617
H1_DZ_Z = -0.2592334226294781
## Properties of helix 2
H2_INID = 1
H2_OUTID = 6
H2_INID2 = 3
H2_OUTID2 = 4
H2_INID2_ORIG = 1742
H2_OUTID2_ORIG = 1724
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 61.75211009044619
H2_P_Y = 133.74412113922503
H2_P_Z = 188.27003412011723
# Orientation:
H2_DX_X = -0.8376166942638932
H2_DX_Y = -0.42966767414665696
H2_DX_Z = 0.3373187858448148
H2_DY_X = 0.4429973911975793
H2_DY_Y = -0.1729981484667178
H2_DY_Z = 0.8796732075147133
H2_DZ_X = -0.3196116156877906
H2_DZ_Y = 0.8862603062421783
H2_DZ_Z = 0.3352477959613793
## Properties of helix 3
H3_INID = 1
H3_OUTID = 18
H3_INID2 = 3
H3_OUTID2 = 16
H3_INID2_ORIG = 1971
H3_OUTID2_ORIG = 1755
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 71.55394960311533
H3_P_Y = 131.1818444662823
H3_P_Z = 145.55728026010254
# Orientation:
H3_DX_X = 0.44253790853871067
H3_DX_Y = 0.20928863437350742
H3_DX_Z = 0.8719853594116387
H3_DY_X = 0.8716792720752551
H3_DY_Y = -0.32871363601873327
H3_DY_Z = -0.36348671520386233
H3_DZ_X = 0.21055983980939175
H3_DZ_Y = 0.9209482140801413
H3_DZ_Z = -0.32790080945619593
## Properties of helix 4
H4_INID = 1
H4_OUTID = 10
H4_INID2 = 3
H4_OUTID2 = 8
H4_INID2_ORIG = 1684
H4_OUTID2_ORIG = 1976
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 59.948022602279366
H4_P_Y = 105.91916477597633
H4_P_Z = 151.42305700682329
# Orientation:
H4_DX_X = 0.6187960414639946
H4_DX_Y = -0.026024436600991407
H4_DX_Z = -0.7851204925156878
H4_DY_X = 0.6514157486737417
H4_DY_Y = -0.5415771534833596
H4_DY_Z = 0.5313677720794772
H4_DZ_X = -0.4390318683743928
H4_DZ_Y = -0.8402481273555225
H4_DZ_Z = -0.31817307087058566
#############  END of Description of junction: j41