############# Start of Description of junction: j40 # Number of strands: NUM_STRANDS = 5 LILLEY = HS7HS8HS8HS9HS11 FINGERPRINT = 19:26:26:46:110:128:132:151:156:173 LOOP_LENGTH_SUM = 43 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2479 S1_NAME_ID3 = 2492 S1_NUM_ID5_ORIG = 2479 S1_NUM_ID3_ORIG = 2492 S1_NAME2_ID5 = 2481 S1_NAME2_ID3 = 2490 S1_NUM2_ID5_ORIG = 2481 S1_NUM2_ID3_ORIG = 2490 S1_SQ2 = GGAUAACAGA S1_SQLEN2 = 10 S1_SQ = AGGGAUAACAGAGU S1_SQLEN = 14 S1_CHAR = 0 ## Properties of strand 2 S2_NAME_ID5 = 2093 S2_NAME_ID3 = 2107 S2_NUM_ID5_ORIG = 2093 S2_NUM_ID3_ORIG = 2107 S2_NAME2_ID5 = 2095 S2_NAME2_ID3 = 2105 S2_NUM2_ID5_ORIG = 2095 S2_NUM2_ID3_ORIG = 2105 S2_SQ2 = AAGCGAAGACC S2_SQLEN2 = 11 S2_SQ = GGAAGCGAAGACCCU S2_SQLEN = 15 S2_CHAR = 0 ## Properties of strand 3 S3_NAME_ID5 = 2529 S3_NAME_ID3 = 2545 S3_NUM_ID5_ORIG = 2529 S3_NUM_ID3_ORIG = 2545 S3_NAME2_ID5 = 2531 S3_NAME2_ID3 = 2543 S3_NUM2_ID5_ORIG = 2531 S3_NUM2_ID3_ORIG = 2543 S3_SQ2 = UACCUCGAUGUCG S3_SQLEN2 = 13 S3_SQ = GCUACCUCGAUGUCGGU S3_SQLEN = 17 S3_CHAR = 0 ## Properties of strand 4 S4_NAME_ID5 = 2613 S4_NAME_ID3 = 2625 S4_NUM_ID5_ORIG = 2613 S4_NUM_ID3_ORIG = 2625 S4_NAME2_ID5 = 2615 S4_NAME2_ID3 = 2623 S4_NUM2_ID5_ORIG = 2615 S4_NUM2_ID3_ORIG = 2623 S4_SQ2 = UGGGUUUAG S4_SQLEN2 = 9 S4_SQ = GCUGGGUUUAGAC S4_SQLEN = 13 S4_CHAR = 0 ## Properties of strand 5 S5_NAME_ID5 = 2639 S5_NAME_ID3 = 2652 S5_NUM_ID5_ORIG = 2639 S5_NUM_ID3_ORIG = 2652 S5_NAME2_ID5 = 2641 S5_NAME2_ID3 = 2650 S5_NUM2_ID5_ORIG = 2641 S5_NUM2_ID3_ORIG = 2650 S5_SQ2 = CGGCUGCUAU S5_SQLEN2 = 10 S5_SQ = GUCGGCUGCUAUCU S5_SQLEN = 14 S5_CHAR = 0 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 15 H1_INID2 = 3 H1_OUTID2 = 13 H1_INID2_ORIG = 2481 H1_OUTID2_ORIG = 2105 H1_INSEQ_CHAR = 0 H1_OUTSEQ_CHAR = 0 # Position: H1_P_X = 71.39331586161555 H1_P_Y = 113.46919878860399 H1_P_Z = 83.26153334511021 # Orientation: H1_DX_X = -0.39431829372865934 H1_DX_Y = -0.8813583219320122 H1_DX_Z = 0.26023180357536546 H1_DY_X = -0.67053905086658 H1_DY_Y = 0.08230279963390785 H1_DY_Z = -0.7372948056478918 H1_DZ_X = 0.6284031066869886 H1_DZ_Y = -0.46522441631282163 H1_DZ_Z = -0.6234386721823881 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 14 H2_INID2 = 3 H2_OUTID2 = 12 H2_INID2_ORIG = 2531 H2_OUTID2_ORIG = 2490 H2_INSEQ_CHAR = 0 H2_OUTSEQ_CHAR = 0 # Position: H2_P_X = 63.53760940349841 H2_P_Y = 109.00049194300318 H2_P_Z = 115.82871385316615 # Orientation: H2_DX_X = -0.5624143172556018 H2_DX_Y = -0.8172562096956284 H2_DX_Z = -0.12562811572196608 H2_DY_X = 0.8234057982268723 H2_DY_Y = -0.5674300787387381 H2_DY_Z = 0.0050987438564789045 H2_DZ_X = -0.07545215167427699 H2_DZ_Y = -0.10057531236087414 H2_DZ_Z = 0.9920643020244313 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 17 H3_INID2 = 3 H3_OUTID2 = 15 H3_INID2_ORIG = 2615 H3_OUTID2_ORIG = 2543 H3_INSEQ_CHAR = 0 H3_OUTSEQ_CHAR = 0 # Position: H3_P_X = 64.94472051989672 H3_P_Y = 131.298136134685 H3_P_Z = 114.53367639895558 # Orientation: H3_DX_X = 0.7552247488384722 H3_DX_Y = 0.5340194890569308 H3_DX_Z = 0.3800773132524995 H3_DY_X = -0.44590335568166495 H3_DY_Y = 0.8435815013826016 H3_DY_Z = -0.2992330996345345 H3_DZ_X = -0.4804224975307676 H3_DZ_Y = 0.0565104931178837 H3_DZ_Z = 0.8752147096763565 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 13 H4_INID2 = 3 H4_OUTID2 = 11 H4_INID2_ORIG = 2641 H4_OUTID2_ORIG = 2623 H4_INSEQ_CHAR = 0 H4_OUTSEQ_CHAR = 0 # Position: H4_P_X = 91.4221689445738 H4_P_Y = 119.74425130788485 H4_P_Z = 94.76592473250412 # Orientation: H4_DX_X = 0.6983601321120716 H4_DX_Y = 0.7070424807506157 H4_DX_Z = -0.11128367486024615 H4_DY_X = 0.3366071456911328 H4_DY_Y = -0.18722416343086934 H4_DY_Z = 0.9228449176851399 H4_DZ_X = 0.6316555670189672 H4_DZ_Y = -0.6819369787902758 H4_DZ_Z = -0.3687454428360013 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 14 H5_INID2 = 3 H5_OUTID2 = 12 H5_INID2_ORIG = 2095 H5_OUTID2_ORIG = 2650 H5_INSEQ_CHAR = 0 H5_OUTSEQ_CHAR = 0 # Position: H5_P_X = 48.517686509434974 H5_P_Y = 141.22266950087123 H5_P_Z = 107.63129676679478 # Orientation: H5_DX_X = -0.7363103966109819 H5_DX_Y = -0.6674232955557784 H5_DX_Z = -0.1113245004123371 H5_DY_X = 0.41858236079406197 H5_DY_Y = -0.5785518563639584 H5_DY_Z = 0.7000475389070715 H5_DZ_X = -0.5316350318354282 H5_DZ_Y = 0.4688538088223879 H5_DZ_Z = 0.70536536552207 ############# END of Description of junction: j40