############# Start of Description of junction: j53 # Number of strands: NUM_STRANDS = 4 LILLEY = 2HS1HS2HS2 FINGERPRINT = 13:15:151:157:166:169 LOOP_LENGTH_SUM = 5 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 1843 S1_NAME_ID3 = 1848 S1_NUM_ID5_ORIG = 1843 S1_NUM_ID3_ORIG = 1848 S1_NAME2_ID5 = 1844 S1_NAME2_ID3 = 1847 S1_NUM2_ID5_ORIG = 1844 S1_NUM2_ID3_ORIG = 1847 S1_SQ2 = CAUA S1_SQLEN2 = 4 S1_SQ = ACAUAG S1_SQLEN = 6 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 1828 S2_NAME_ID3 = 1833 S2_NUM_ID5_ORIG = 1828 S2_NUM_ID3_ORIG = 1833 S2_NAME2_ID5 = 1829 S2_NAME2_ID3 = 1832 S2_NUM2_ID5_ORIG = 1829 S2_NUM2_ID3_ORIG = 1832 S2_SQ2 = ACUG S2_SQLEN2 = 4 S2_SQ = GACUGU S2_SQLEN = 6 S2_CHAR = A ## Properties of strand 3 S3_NAME_ID5 = 1883 S3_NAME_ID3 = 1886 S3_NUM_ID5_ORIG = 1883 S3_NUM_ID3_ORIG = 1886 S3_NAME2_ID5 = 1884 S3_NAME2_ID3 = 1885 S3_NUM2_ID5_ORIG = 1884 S3_NUM2_ID3_ORIG = 1885 S3_SQ2 = GA S3_SQLEN2 = 2 S3_SQ = UGAA S3_SQLEN = 4 S3_CHAR = A ## Properties of strand 4 S4_NAME_ID5 = 2016 S4_NAME_ID3 = 2020 S4_NUM_ID5_ORIG = 2016 S4_NUM_ID3_ORIG = 2020 S4_NAME2_ID5 = 2017 S4_NAME2_ID3 = 2019 S4_NUM2_ID5_ORIG = 2017 S4_NUM2_ID3_ORIG = 2019 S4_SQ2 = UAA S4_SQLEN2 = 3 S4_SQ = UUAAC S4_SQLEN = 5 S4_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 6 H1_INID2 = 2 H1_OUTID2 = 5 H1_INID2_ORIG = 1844 H1_OUTID2_ORIG = 1832 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 97.36938106857525 H1_P_Y = 140.80703634615037 H1_P_Z = 92.29293469823234 # Orientation: H1_DX_X = -0.057309838484826514 H1_DX_Y = 0.22803756583184054 H1_DX_Z = -0.9719642230978991 H1_DY_X = -0.4086804463614726 H1_DY_Y = -0.8936152711171417 H1_DY_Z = -0.1855587238262757 H1_DZ_X = -0.9108764324400056 H1_DZ_Y = 0.3865884320510986 H1_DZ_Z = 0.1444074410466385 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 6 H2_INID2 = 2 H2_OUTID2 = 5 H2_INID2_ORIG = 1884 H2_OUTID2_ORIG = 1847 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 111.2820013145022 H2_P_Y = 131.46373794749644 H2_P_Z = 78.7877936637083 # Orientation: H2_DX_X = 0.6483081178920287 H2_DX_Y = 0.5809581125070622 H2_DX_Z = 0.4921221959915556 H2_DY_X = 0.19648869168990757 H2_DY_Y = -0.7521250890969782 H2_DY_Z = 0.6290469333753066 H2_DZ_X = 0.7355873695988038 H2_DZ_Y = -0.311119787000365 H2_DZ_Z = -0.6017605003849695 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 4 H3_INID2 = 2 H3_OUTID2 = 3 H3_INID2_ORIG = 2017 H3_OUTID2_ORIG = 1885 H3_INSEQ_CHAR = A H3_OUTSEQ_CHAR = A # Position: H3_P_X = 113.8246505476238 H3_P_Y = 130.50521007495448 H3_P_Z = 94.01761221264236 # Orientation: H3_DX_X = 0.5095449002913597 H3_DX_Y = 0.8500644859922488 H3_DX_Z = -0.13324550364582421 H3_DY_X = 0.47084038233043657 H3_DY_Y = -0.1458479739185634 H3_DY_Z = 0.8700791359817828 H3_DZ_X = 0.7201897867604146 H3_DZ_Y = -0.5060817504698321 H3_DZ_Z = -0.4745607789181321 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 5 H4_INID2 = 2 H4_OUTID2 = 4 H4_INID2_ORIG = 1829 H4_OUTID2_ORIG = 2019 H4_INSEQ_CHAR = A H4_OUTSEQ_CHAR = A # Position: H4_P_X = 105.93534213915098 H4_P_Y = 140.14190087564887 H4_P_Z = 103.76471564207198 # Orientation: H4_DX_X = 0.08423524384700443 H4_DX_Y = 0.7923111449134979 H4_DX_Z = -0.6042743361585821 H4_DY_X = -0.5392102263380991 H4_DY_Y = -0.47372461401681676 H4_DY_Z = -0.6963026079852455 H4_DZ_X = -0.8379479431960277 H4_DZ_Y = 0.384484121545313 H4_DZ_Z = 0.38731796340096025 ############# END of Description of junction: j53