#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 2HS12HS1
FINGERPRINT = 39:52:134:135:173:174
LOOP_LENGTH_SUM = 2
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  5
S1_NAME_ID3 = 11
S1_NUM_ID5_ORIG =  5
S1_NUM_ID3_ORIG = 11
S1_NAME2_ID5 =  7
S1_NAME2_ID3 = 9
S1_NUM2_ID5_ORIG =  7
S1_NUM2_ID3_ORIG = 9
S1_SQ2 = CUG
S1_SQLEN2 = 3
S1_SQ = ACCUGAC
S1_SQLEN = 7
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  82
S2_NAME_ID3 = 87
S2_NUM_ID5_ORIG =  82
S2_NUM_ID3_ORIG = 87
S2_NAME2_ID5 =  84
S2_NAME2_ID3 = 85
S2_NUM2_ID5_ORIG =  84
S2_NUM2_ID3_ORIG = 85
S2_SQ2 = UG
S2_SQLEN2 = 2
S2_SQ = CGUGGU
S2_SQLEN = 6
S2_CHAR = B
## Properties of strand 3
S3_NAME_ID5 =  11
S3_NAME_ID3 = 17
S3_NUM_ID5_ORIG =  11
S3_NUM_ID3_ORIG = 17
S3_NAME2_ID5 =  13
S3_NAME2_ID3 = 15
S3_NUM2_ID5_ORIG =  13
S3_NUM2_ID3_ORIG = 15
S3_SQ2 = CAA
S3_SQLEN2 = 3
S3_SQ = GUCAACC
S3_SQLEN = 7
S3_CHAR = B
## Properties of strand 4
S4_NAME_ID5 =  66
S4_NAME_ID3 = 71
S4_NUM_ID5_ORIG =  66
S4_NUM_ID3_ORIG = 71
S4_NAME2_ID5 =  68
S4_NAME2_ID3 = 69
S4_NUM2_ID5_ORIG =  68
S4_NUM2_ID3_ORIG = 69
S4_SQ2 = UA
S4_SQLEN2 = 2
S4_SQ = GGUACG
S4_SQLEN = 6
S4_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 3
H1_OUTID2 = 4
H1_INID2_ORIG = 7
H1_OUTID2_ORIG = 85
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = B
# Position:
H1_P_X = 105.225051319124
H1_P_Y = 34.7438195278374
H1_P_Z = 41.84224162578072
# Orientation:
H1_DX_X = 0.16933259341529094
H1_DX_Y = 0.5533046368043983
H1_DX_Z = -0.8155859560451049
H1_DY_X = -0.5384980283510714
H1_DY_Y = 0.7450307682351749
H1_DY_Z = 0.39363565367597886
H1_DZ_X = 0.8254370637845483
H1_DZ_Y = 0.3725360831834408
H1_DZ_Z = 0.42411144815612545
## Properties of helix 2
H2_INID = 1
H2_OUTID = 7
H2_INID2 = 3
H2_OUTID2 = 5
H2_INID2_ORIG = 13
H2_OUTID2_ORIG = 9
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 87.01715496517072
H2_P_Y = 28.970614611682922
H2_P_Z = 34.178683212367375
# Orientation:
H2_DX_X = 0.3859395562175223
H2_DX_Y = -0.9047980145913677
H2_DX_Z = -0.17997558650587564
H2_DY_X = -0.26700316248100364
H2_DY_Y = -0.2962954883791582
H2_DY_Z = 0.9170159730295353
H2_DZ_X = -0.8830401860457755
H2_DZ_Y = -0.3058586869089659
H2_DZ_Z = -0.35593608059674153
## Properties of helix 3
H3_INID = 1
H3_OUTID = 7
H3_INID2 = 3
H3_OUTID2 = 5
H3_INID2_ORIG = 68
H3_OUTID2_ORIG = 15
H3_INSEQ_CHAR = B
H3_OUTSEQ_CHAR = B
# Position:
H3_P_X = 102.48348501623829
H3_P_Y = 14.404565378610082
H3_P_Z = 33.7386784074719
# Orientation:
H3_DX_X = -0.25032058375590793
H3_DX_Y = 0.08812720872141888
H3_DX_Z = -0.9641437654370151
H3_DY_X = -7.553632140400168E-4
H3_DY_Y = -0.9958660656917004
H3_DY_Z = -0.09083065908683352
H3_DZ_X = -0.9681627108985964
H3_DZ_Y = -0.022008504872099266
H3_DZ_Z = 0.24935234295827513
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 84
H4_OUTID2_ORIG = 69
H4_INSEQ_CHAR = B
H4_OUTSEQ_CHAR = B
# Position:
H4_P_X = 118.93783703139053
H4_P_Y = 13.178603809071177
H4_P_Z = 28.865507213481255
# Orientation:
H4_DX_X = 0.023263535261492052
H4_DX_Y = 0.9844627517139255
H4_DX_Z = -0.174045679104605
H4_DY_X = 0.3219666294503156
H4_DY_Y = 0.15743966969792922
H4_DY_Z = 0.9335685512729199
H4_DZ_X = 0.9464651591302982
H4_DZ_Y = -0.07775500558325277
H4_DZ_Z = -0.3133015506811283
#############  END of Description of junction: j1