#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 38:66:72:80:107:109:117:117:127:171
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.6025344093051
H1_P_Y = 44.26006931710516
H1_P_Z = 8.876845016477954
# Orientation:
H1_DX_X = -0.13278174135714949
H1_DX_Y = 0.8107977136116347
H1_DX_Z = 0.570066730097718
H1_DY_X = -0.9426426568192312
H1_DY_Y = 0.07441529885582554
H1_DY_Z = -0.32540311129578114
H1_DZ_X = -0.30625778472871446
H1_DZ_Y = -0.5805768087844569
H1_DZ_Z = 0.7544115179361466
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.13615519555182
H2_P_Y = 70.23565194893887
H2_P_Z = -0.9180673421008207
# Orientation:
H2_DX_X = 0.8430407481069153
H2_DX_Y = -0.40369652037001913
H2_DX_Z = 0.355403174539071
H2_DY_X = 0.3546242155277355
H2_DY_Y = -0.0796042165565467
H2_DY_Z = -0.9316141016900306
H2_DZ_X = 0.40438096245080146
H2_DZ_Y = 0.9114232212027247
H2_DZ_Z = 0.07605096356919971
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 133.88393973231086
H3_P_Y = 49.77447300244162
H3_P_Z = -7.546753493980335
# Orientation:
H3_DX_X = 0.5773434776039323
H3_DX_Y = 0.4815374902799263
H3_DX_Z = -0.6593907447963758
H3_DY_X = -0.24333766746406127
H3_DY_Y = -0.6694075157658048
H3_DY_Z = -0.7019119299665793
H3_DZ_X = -0.7793980295467406
H3_DZ_Y = 0.5656988804047316
H3_DZ_Z = -0.26930185340521007
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 145.090237389115
H4_P_Y = 37.935048285857135
H4_P_Z = -3.323746810315756
# Orientation:
H4_DX_X = 0.4277750828580622
H4_DX_Y = 0.6765230248161487
H4_DX_Z = 0.5994372989557797
H4_DY_X = -0.602763796661776
H4_DY_Y = -0.28067991212346755
H4_DY_Z = 0.7469234180049673
H4_DZ_X = 0.6735608984491819
H4_DZ_Y = -0.6808343292049628
H4_DZ_Z = 0.28771571430208454
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.18526511889135
H5_P_Y = 55.46420808666803
H5_P_Z = 10.401786515234024
# Orientation:
H5_DX_X = -0.38452230385402686
H5_DX_Y = 0.5535758969112692
H5_DX_Z = 0.7387126127241164
H5_DY_X = 0.2801076606554602
H5_DY_Y = -0.6925383603337494
H5_DY_Z = 0.6647783975945352
H5_DZ_X = 0.8795921192694607
H5_DZ_Y = 0.46254118284227275
H5_DZ_Z = 0.11123559634374303
#############  END of Description of junction: j1