#############  Start of Description of junction: j41
# Number of strands:
NUM_STRANDS = 5
LILLEY = HS7HS8HS8HS9HS11
FINGERPRINT = 20:27:27:47:109:127:130:150:155:172
LOOP_LENGTH_SUM = 43
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  2479
S1_NAME_ID3 = 2492
S1_NUM_ID5_ORIG =  2479
S1_NUM_ID3_ORIG = 2492
S1_NAME2_ID5 =  2481
S1_NAME2_ID3 = 2490
S1_NUM2_ID5_ORIG =  2481
S1_NUM2_ID3_ORIG = 2490
S1_SQ2 = GGAUAACAGA
S1_SQLEN2 = 10
S1_SQ = AGGGAUAACAGAGU
S1_SQLEN = 14
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  2093
S2_NAME_ID3 = 2107
S2_NUM_ID5_ORIG =  2093
S2_NUM_ID3_ORIG = 2107
S2_NAME2_ID5 =  2095
S2_NAME2_ID3 = 2105
S2_NUM2_ID5_ORIG =  2095
S2_NUM2_ID3_ORIG = 2105
S2_SQ2 = AAGCGAAGACC
S2_SQLEN2 = 11
S2_SQ = GGAAGCGAAGACCCU
S2_SQLEN = 15
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  2529
S3_NAME_ID3 = 2545
S3_NUM_ID5_ORIG =  2529
S3_NUM_ID3_ORIG = 2545
S3_NAME2_ID5 =  2531
S3_NAME2_ID3 = 2543
S3_NUM2_ID5_ORIG =  2531
S3_NUM2_ID3_ORIG = 2543
S3_SQ2 = UACCUCGAUGUCG
S3_SQLEN2 = 13
S3_SQ = GCUACCUCGAUGUCGGU
S3_SQLEN = 17
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  2613
S4_NAME_ID3 = 2625
S4_NUM_ID5_ORIG =  2613
S4_NUM_ID3_ORIG = 2625
S4_NAME2_ID5 =  2615
S4_NAME2_ID3 = 2623
S4_NUM2_ID5_ORIG =  2615
S4_NUM2_ID3_ORIG = 2623
S4_SQ2 = UGGGUUUAG
S4_SQLEN2 = 9
S4_SQ = GCUGGGUUUAGAC
S4_SQLEN = 13
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  2639
S5_NAME_ID3 = 2652
S5_NUM_ID5_ORIG =  2639
S5_NUM_ID3_ORIG = 2652
S5_NAME2_ID5 =  2641
S5_NAME2_ID3 = 2650
S5_NUM2_ID5_ORIG =  2641
S5_NUM2_ID3_ORIG = 2650
S5_SQ2 = CGGCUGCUAU
S5_SQLEN2 = 10
S5_SQ = GUCGGCUGCUAUCU
S5_SQLEN = 14
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 15
H1_INID2 = 3
H1_OUTID2 = 13
H1_INID2_ORIG = 2481
H1_OUTID2_ORIG = 2105
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 71.11824302980564
H1_P_Y = 113.18581640401183
H1_P_Z = 82.71967201674046
# Orientation:
H1_DX_X = -0.3720865765873924
H1_DX_Y = -0.8923689729906528
H1_DX_Z = 0.2554000696301415
H1_DY_X = -0.6800381630068557
H1_DY_Y = 0.07480871175937409
H1_DY_Z = -0.729350226913752
H1_DZ_X = 0.6317433627492477
H1_DZ_Y = -0.4450632232486811
H1_DZ_Z = -0.6346802745743503
## Properties of helix 2
H2_INID = 1
H2_OUTID = 14
H2_INID2 = 3
H2_OUTID2 = 12
H2_INID2_ORIG = 2531
H2_OUTID2_ORIG = 2490
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 63.62873382986884
H2_P_Y = 108.51643846702478
H2_P_Z = 115.41528097874624
# Orientation:
H2_DX_X = -0.5932118768736885
H2_DX_Y = -0.7936381478169636
H2_DX_Z = -0.13504872996686856
H2_DY_X = 0.8033183340295338
H2_DY_Y = -0.5945356994051849
H2_DY_Z = -0.03474127724766163
H2_DZ_X = -0.05271928819700378
H2_DZ_Y = -0.12909605905086607
H2_DZ_Z = 0.9902297128391666
## Properties of helix 3
H3_INID = 1
H3_OUTID = 17
H3_INID2 = 3
H3_OUTID2 = 15
H3_INID2_ORIG = 2615
H3_OUTID2_ORIG = 2543
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 64.61482721579802
H3_P_Y = 130.56369375960946
H3_P_Z = 113.91377576570964
# Orientation:
H3_DX_X = 0.7457708246187451
H3_DX_Y = 0.5326651069830461
H3_DX_Z = 0.4001171840226476
H3_DY_X = -0.45991448280393854
H3_DY_Y = 0.8461598567909334
H3_DY_Z = -0.2692436912217886
H3_DZ_X = -0.4819798187213564
H3_DZ_Y = 0.016774401875125022
H3_DZ_Z = 0.8760217313440677
## Properties of helix 4
H4_INID = 1
H4_OUTID = 13
H4_INID2 = 3
H4_OUTID2 = 11
H4_INID2_ORIG = 2641
H4_OUTID2_ORIG = 2623
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 90.91680877557381
H4_P_Y = 119.26061871039438
H4_P_Z = 94.37572342797779
# Orientation:
H4_DX_X = 0.7158664704048618
H4_DX_Y = 0.6918014068805007
H4_DX_Z = -0.09458334942399915
H4_DY_X = 0.3272681547824874
H4_DY_Y = -0.21277912244666197
H4_DY_Z = 0.9206631305293485
H4_DZ_X = 0.616790686874694
H4_DZ_Y = -0.6900259839230642
H4_DZ_Z = -0.3787260092674387
## Properties of helix 5
H5_INID = 1
H5_OUTID = 14
H5_INID2 = 3
H5_OUTID2 = 12
H5_INID2_ORIG = 2095
H5_OUTID2_ORIG = 2650
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 48.321809858164464
H5_P_Y = 140.80461623709104
H5_P_Z = 107.46347135071626
# Orientation:
H5_DX_X = -0.7396537730185528
H5_DX_Y = -0.6632777220864909
H5_DX_Z = -0.11390767947411007
H5_DY_X = 0.4273866036063865
H5_DY_Y = -0.593691083567478
H5_DY_Z = 0.6818149223581571
H5_DZ_X = -0.5198586222399371
H5_DZ_Y = 0.45562436356743774
H5_DZ_Z = 0.7226018628584967
#############  END of Description of junction: j41