############# Start of Description of junction: j88 # Number of strands: NUM_STRANDS = 5 LILLEY = HS4HS8HS6HS9HS6 FINGERPRINT = 11:22:57:59:93:115:148:150:165:172 LOOP_LENGTH_SUM = 33 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2424 S1_NAME_ID3 = 2433 S1_NUM_ID5_ORIG = 2424 S1_NUM_ID3_ORIG = 2433 S1_NAME2_ID5 = 2425 S1_NAME2_ID3 = 2432 S1_NUM2_ID5_ORIG = 2425 S1_NUM2_ID3_ORIG = 2432 S1_SQ2 = GGAUAACA S1_SQLEN2 = 8 S1_SQ = GGGAUAACAG S1_SQLEN = 10 S1_CHAR = 0 ## Properties of strand 2 S2_NAME_ID5 = 2036 S2_NAME_ID3 = 2048 S2_NUM_ID5_ORIG = 2036 S2_NUM_ID3_ORIG = 2048 S2_NAME2_ID5 = 2037 S2_NAME2_ID3 = 2047 S2_NUM2_ID5_ORIG = 2037 S2_NUM2_ID3_ORIG = 2047 S2_SQ2 = ACGAAAAGACC S2_SQLEN2 = 11 S2_SQ = GACGAAAAGACCC S2_SQLEN = 13 S2_CHAR = 0 ## Properties of strand 3 S3_NAME_ID5 = 2477 S3_NAME_ID3 = 2486 S3_NUM_ID5_ORIG = 2477 S3_NUM_ID3_ORIG = 2486 S3_NAME2_ID5 = 2478 S3_NAME2_ID3 = 2485 S3_NUM2_ID5_ORIG = 2478 S3_NUM2_ID3_ORIG = 2485 S3_SQ2 = CUCGAUGU S3_SQLEN2 = 8 S3_SQ = CCUCGAUGUC S3_SQLEN = 10 S3_CHAR = 0 ## Properties of strand 4 S4_NAME_ID5 = 2561 S4_NAME_ID3 = 2568 S4_NUM_ID5_ORIG = 2561 S4_NUM_ID3_ORIG = 2568 S4_NAME2_ID5 = 2562 S4_NAME2_ID3 = 2567 S4_NUM2_ID5_ORIG = 2562 S4_NUM2_ID3_ORIG = 2567 S4_SQ2 = GUUCAG S4_SQLEN2 = 6 S4_SQ = GGUUCAGA S4_SQLEN = 8 S4_CHAR = 0 ## Properties of strand 5 S5_NAME_ID5 = 2584 S5_NAME_ID3 = 2595 S5_NUM_ID5_ORIG = 2584 S5_NUM_ID3_ORIG = 2595 S5_NAME2_ID5 = 2585 S5_NAME2_ID3 = 2594 S5_NUM2_ID5_ORIG = 2585 S5_NUM2_ID3_ORIG = 2594 S5_SQ2 = CGGUCUCUAU S5_SQLEN2 = 10 S5_SQ = UCGGUCUCUAUC S5_SQLEN = 12 S5_CHAR = 0 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 13 H1_INID2 = 2 H1_OUTID2 = 12 H1_INID2_ORIG = 2425 H1_OUTID2_ORIG = 2047 H1_INSEQ_CHAR = 0 H1_OUTSEQ_CHAR = 0 # Position: H1_P_X = 48.61302077932764 H1_P_Y = 131.7938229149668 H1_P_Z = 103.54463838978876 # Orientation: H1_DX_X = 0.7299246838943887 H1_DX_Y = -0.4201192048908524 H1_DX_Z = -0.5391751195331125 H1_DY_X = -0.6562036919596252 H1_DY_Y = -0.20990288520289369 H1_DY_Z = -0.7248016924939265 H1_DZ_X = 0.19132869753446613 H1_DZ_Y = 0.8828593503301363 H1_DZ_Z = -0.4288970704427868 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 10 H2_INID2 = 2 H2_OUTID2 = 9 H2_INID2_ORIG = 2478 H2_OUTID2_ORIG = 2432 H2_INSEQ_CHAR = 0 H2_OUTSEQ_CHAR = 0 # Position: H2_P_X = 59.18994097557856 H2_P_Y = 110.67584865266731 H2_P_Z = 99.56080186327979 # Orientation: H2_DX_X = -0.3669317667738028 H2_DX_Y = -0.5607534681537629 H2_DX_Z = 0.7422375808902331 H2_DY_X = -0.6768577137399419 H2_DY_Y = -0.3864093577518304 H2_DY_Z = -0.6265392594184078 H2_DZ_X = 0.638141609584423 H2_DZ_Y = -0.7322863894647753 H2_DZ_Z = -0.23776444208849057 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 10 H3_INID2 = 2 H3_OUTID2 = 9 H3_INID2_ORIG = 2562 H3_OUTID2_ORIG = 2485 H3_INSEQ_CHAR = 0 H3_OUTSEQ_CHAR = 0 # Position: H3_P_X = 56.48016038081542 H3_P_Y = 118.35595940410354 H3_P_Z = 125.04835998671254 # Orientation: H3_DX_X = 0.5920059983712989 H3_DX_Y = -0.35055319583526057 H3_DX_Z = -0.7257005958259128 H3_DY_X = 0.803532116008256 H3_DY_Y = 0.18727467189859226 H3_DY_Z = 0.5650348093777637 H3_DZ_X = -0.06216941720563085 H3_DZ_Y = -0.9176277317926775 H3_DZ_Z = 0.3925484803299497 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 8 H4_INID2 = 2 H4_OUTID2 = 7 H4_INID2_ORIG = 2585 H4_OUTID2_ORIG = 2567 H4_INSEQ_CHAR = 0 H4_OUTSEQ_CHAR = 0 # Position: H4_P_X = 65.69814089287098 H4_P_Y = 136.53620325609205 H4_P_Z = 119.02750821329553 # Orientation: H4_DX_X = -0.3061698725697113 H4_DX_Y = 0.7261289993088269 H4_DX_Z = 0.6156270668947315 H4_DY_X = 0.8212869428141829 H4_DY_Y = -0.12554507255381964 H4_DY_Z = 0.5565304954091914 H4_DZ_X = 0.48140187649572397 H4_DZ_Y = 0.6759993425442303 H4_DZ_Z = -0.5579221470654971 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 12 H5_INID2 = 2 H5_OUTID2 = 11 H5_INID2_ORIG = 2037 H5_OUTID2_ORIG = 2594 H5_INSEQ_CHAR = 0 H5_OUTSEQ_CHAR = 0 # Position: H5_P_X = 39.83128853036961 H5_P_Y = 103.30921142710554 H5_P_Z = 125.35904714280277 # Orientation: H5_DX_X = -0.8645164212691725 H5_DX_Y = -0.29719398164107247 H5_DX_Z = -0.4053234444641305 H5_DY_X = 0.5012812274057197 H5_DY_Y = -0.4513665549557544 H5_DY_Z = -0.7382312402750131 H5_DZ_X = 0.036448434898595394 H5_DZ_Y = -0.8413940636489485 H5_DZ_Z = 0.5391915626655788 ############# END of Description of junction: j88