############# Start of Description of junction: j3 # Number of strands: NUM_STRANDS = 5 LILLEY = 2HS1HS1HS3HS5 FINGERPRINT = 27:73:83:84:98:106:119:154:156:170 LOOP_LENGTH_SUM = 10 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 114 S1_NAME_ID3 = 120 S1_NUM_ID5_ORIG = 114 S1_NUM_ID3_ORIG = 120 S1_NAME2_ID5 = 115 S1_NAME2_ID3 = 119 S1_NUM2_ID5_ORIG = 115 S1_NUM2_ID3_ORIG = 119 S1_SQ2 = GAAUG S1_SQLEN2 = 5 S1_SQ = CGAAUGG S1_SQLEN = 7 S1_CHAR = 0 ## Properties of strand 2 S2_NAME_ID5 = 45 S2_NAME_ID3 = 53 S2_NUM_ID5_ORIG = 45 S2_NUM_ID3_ORIG = 53 S2_NAME2_ID5 = 46 S2_NAME2_ID3 = 52 S2_NUM2_ID5_ORIG = 46 S2_NUM2_ID3_ORIG = 52 S2_SQ2 = CGAUGAA S2_SQLEN2 = 7 S2_SQ = CCGAUGAAG S2_SQLEN = 9 S2_CHAR = 0 ## Properties of strand 3 S3_NAME_ID5 = 127 S3_NAME_ID3 = 130 S3_NUM_ID5_ORIG = 127 S3_NUM_ID3_ORIG = 130 S3_NAME2_ID5 = 128 S3_NAME2_ID3 = 129 S3_NUM2_ID5_ORIG = 128 S3_NUM2_ID3_ORIG = 129 S3_SQ2 = CA S3_SQLEN2 = 2 S3_SQ = CCAC S3_SQLEN = 4 S3_CHAR = 0 ## Properties of strand 4 S4_NAME_ID5 = 141 S4_NAME_ID3 = 145 S4_NUM_ID5_ORIG = 141 S4_NUM_ID3_ORIG = 145 S4_NAME2_ID5 = 142 S4_NAME2_ID3 = 144 S4_NUM2_ID5_ORIG = 142 S4_NUM2_ID3_ORIG = 144 S4_SQ2 = UAU S4_SQLEN2 = 3 S4_SQ = GUAUC S4_SQLEN = 5 S4_CHAR = 0 ## Properties of strand 5 S5_NAME_ID5 = 152 S5_NAME_ID3 = 156 S5_NUM_ID5_ORIG = 152 S5_NUM_ID3_ORIG = 156 S5_NAME2_ID5 = 153 S5_NAME2_ID3 = 155 S5_NUM2_ID5_ORIG = 153 S5_NUM2_ID3_ORIG = 155 S5_SQ2 = AUG S5_SQLEN2 = 3 S5_SQ = GAUGG S5_SQLEN = 5 S5_CHAR = 0 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 9 H1_INID2 = 2 H1_OUTID2 = 8 H1_INID2_ORIG = 115 H1_OUTID2_ORIG = 52 H1_INSEQ_CHAR = 0 H1_OUTSEQ_CHAR = 0 # Position: H1_P_X = 0.2963330796291208 H1_P_Y = 166.51991925661167 H1_P_Z = 123.03928212638161 # Orientation: H1_DX_X = 0.5094448624504699 H1_DX_Y = -0.6247719353567334 H1_DX_Z = -0.5917144251354927 H1_DY_X = 0.6991675168544044 H1_DY_Y = -0.10032160887382702 H1_DY_Z = 0.7078844243014686 H1_DZ_X = -0.5016280649031438 H1_DZ_Y = -0.7743355884780101 H1_DZ_Z = 0.38571191441015173 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 7 H2_INID2 = 2 H2_OUTID2 = 6 H2_INID2_ORIG = 128 H2_OUTID2_ORIG = 119 H2_INSEQ_CHAR = 0 H2_OUTSEQ_CHAR = 0 # Position: H2_P_X = 9.502792940958784 H2_P_Y = 173.25549741767327 H2_P_Z = 131.1402175569722 # Orientation: H2_DX_X = 0.5429762951449568 H2_DX_Y = 0.8390263401570337 H2_DX_Z = 0.03480723248659956 H2_DY_X = 0.5250407176062986 H2_DY_Y = -0.3715453437929739 H2_DY_Z = 0.7656933474709149 H2_DZ_X = 0.655369352171828 H2_DZ_Y = -0.39747812270422855 H2_DZ_Z = -0.6422633059776786 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 4 H3_INID2 = 2 H3_OUTID2 = 3 H3_INID2_ORIG = 142 H3_OUTID2_ORIG = 129 H3_INSEQ_CHAR = 0 H3_OUTSEQ_CHAR = 0 # Position: H3_P_X = 1.2131831995230193 H3_P_Y = 182.7884267355513 H3_P_Z = 136.969944019817 # Orientation: H3_DX_X = 0.8266266062319947 H3_DX_Y = 0.5006084509439006 H3_DX_Z = 0.2570595898093302 H3_DY_X = -0.20450872678874932 H3_DY_Y = 0.6927914144209808 H3_DY_Z = -0.6915318045988954 H3_DZ_X = -0.5242753422931724 H3_DZ_Y = 0.5190676593163346 H3_DZ_Z = 0.6750586126516964 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 5 H4_INID2 = 2 H4_OUTID2 = 4 H4_INID2_ORIG = 153 H4_OUTID2_ORIG = 144 H4_INSEQ_CHAR = 0 H4_OUTSEQ_CHAR = 0 # Position: H4_P_X = 8.710481880934154 H4_P_Y = 191.1537116386466 H4_P_Z = 116.5649461324635 # Orientation: H4_DX_X = 0.9441983507855252 H4_DX_Y = -0.2557655086476984 H4_DX_Z = -0.20754151141419186 H4_DY_X = -0.23477549410343812 H4_DY_Y = -0.08065869838461026 H4_DY_Z = -0.9686973943102117 H4_DZ_X = 0.23101935360998915 H4_DZ_Y = 0.9633681430071874 H4_DZ_Z = -0.13620528365864004 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 5 H5_INID2 = 2 H5_OUTID2 = 4 H5_INID2_ORIG = 46 H5_OUTID2_ORIG = 155 H5_INSEQ_CHAR = 0 H5_OUTSEQ_CHAR = 0 # Position: H5_P_X = 10.724426713910574 H5_P_Y = 171.7834035465064 H5_P_Z = 103.77536334054362 # Orientation: H5_DX_X = 0.018284198163485144 H5_DX_Y = -0.3552549204852369 H5_DX_Z = 0.9345906213784474 H5_DY_X = -0.7539270904447921 H5_DY_Y = -0.6188530963198104 H5_DY_Z = -0.220487612960099 H5_DZ_X = 0.656703609241621 H5_DZ_Y = -0.7005817487248862 H5_DZ_Z = -0.2791515412148442 ############# END of Description of junction: j3