#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 38:64:73:81:108:109:117:117:125:170
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 97.99415041327791
H1_P_Y = 124.88992795467621
H1_P_Z = 148.96071504978465
# Orientation:
H1_DX_X = -0.9947473294787983
H1_DX_Y = 0.033079996100838116
H1_DX_Z = -0.096868283523321
H1_DY_X = -0.09858027834864913
H1_DY_Y = -0.05478231589462723
H1_DY_Z = 0.9936200614852169
H1_DZ_X = 0.027562278851490873
H1_DZ_Y = 0.9979502050318843
H1_DZ_Z = 0.05775559766223637
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 85.03911983562098
H2_P_Y = 98.08129094532038
H2_P_Z = 136.39533227020837
# Orientation:
H2_DX_X = 0.36688010941188054
H2_DX_Y = 0.2729225883201991
H2_DX_Z = -0.8893324721961449
H2_DY_X = 0.5952310182751717
H2_DY_Y = -0.803553944843145
H2_DY_Z = -0.0010452799154450076
H2_DZ_X = -0.7149118968103778
H2_DZ_Y = -0.5289747806007625
H2_DZ_Z = -0.4572599493585301
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 105.6523343213309
H3_P_Y = 103.82485633210146
H3_P_Z = 137.66193800162708
# Orientation:
H3_DX_X = 0.05459202912564365
H3_DX_Y = -0.9293339841086379
H3_DX_Z = -0.36518222346754214
H3_DY_X = 0.8739398252445483
H3_DY_Y = -0.13242385025688463
H3_DY_Z = 0.4676463468633756
H3_DZ_X = -0.4829584787613612
H3_DZ_Y = -0.3446770515481177
H3_DZ_Z = 0.8049526929755757
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 117.79016386847053
H4_P_Y = 110.63716716792864
H4_P_Z = 125.56882423277199
# Orientation:
H4_DX_X = -0.7762185296838027
H4_DX_Y = -0.02324360409646431
H4_DX_Z = -0.6300353395200347
H4_DY_X = -0.30713502373237134
H4_DY_Y = 0.8866616895940069
H4_DY_Z = 0.3456864553366472
H4_DZ_X = 0.5505931995334095
H4_DZ_Y = 0.46183415104873404
H4_DZ_Z = -0.6953821579194255
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 94.19575830543451
H5_P_Y = 111.65148409504178
H5_P_Z = 123.13359310913121
# Orientation:
H5_DX_X = -0.9226567278044371
H5_DX_Y = 0.3772501427013992
H5_DX_Z = 0.07991803594293856
H5_DY_X = 0.3016577005816572
H5_DY_Y = 0.8351921420709658
H5_DY_Z = -0.4598442317815028
H5_DZ_X = -0.24022321768926247
H5_DZ_Y = -0.40017048323771576
H5_DZ_Z = -0.8843960594825688
#############  END of Description of junction: j1