############# Start of Description of junction: j43 # Number of strands: NUM_STRANDS = 5 LILLEY = HS7HS8HS8HS9HS11 FINGERPRINT = 17:23:29:46:109:126:133:151:155:172 LOOP_LENGTH_SUM = 43 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 2479 S1_NAME_ID3 = 2492 S1_NUM_ID5_ORIG = 2479 S1_NUM_ID3_ORIG = 2492 S1_NAME2_ID5 = 2481 S1_NAME2_ID3 = 2490 S1_NUM2_ID5_ORIG = 2481 S1_NUM2_ID3_ORIG = 2490 S1_SQ2 = GGAUAACAGA S1_SQLEN2 = 10 S1_SQ = AGGGAUAACAGAGU S1_SQLEN = 14 S1_CHAR = A ## Properties of strand 2 S2_NAME_ID5 = 2093 S2_NAME_ID3 = 2107 S2_NUM_ID5_ORIG = 2093 S2_NUM_ID3_ORIG = 2107 S2_NAME2_ID5 = 2095 S2_NAME2_ID3 = 2105 S2_NUM2_ID5_ORIG = 2095 S2_NUM2_ID3_ORIG = 2105 S2_SQ2 = AAGCGAAGACC S2_SQLEN2 = 11 S2_SQ = GGAAGCGAAGACCCU S2_SQLEN = 15 S2_CHAR = A ## Properties of strand 3 S3_NAME_ID5 = 2529 S3_NAME_ID3 = 2545 S3_NUM_ID5_ORIG = 2529 S3_NUM_ID3_ORIG = 2545 S3_NAME2_ID5 = 2531 S3_NAME2_ID3 = 2543 S3_NUM2_ID5_ORIG = 2531 S3_NUM2_ID3_ORIG = 2543 S3_SQ2 = UACCUCGAUGUCG S3_SQLEN2 = 13 S3_SQ = GCUACCUCGAUGUCGGU S3_SQLEN = 17 S3_CHAR = A ## Properties of strand 4 S4_NAME_ID5 = 2613 S4_NAME_ID3 = 2625 S4_NUM_ID5_ORIG = 2613 S4_NUM_ID3_ORIG = 2625 S4_NAME2_ID5 = 2615 S4_NAME2_ID3 = 2623 S4_NUM2_ID5_ORIG = 2615 S4_NUM2_ID3_ORIG = 2623 S4_SQ2 = UGGGUUUAG S4_SQLEN2 = 9 S4_SQ = GCUGGGUUUAGAC S4_SQLEN = 13 S4_CHAR = A ## Properties of strand 5 S5_NAME_ID5 = 2639 S5_NAME_ID3 = 2652 S5_NUM_ID5_ORIG = 2639 S5_NUM_ID3_ORIG = 2652 S5_NAME2_ID5 = 2641 S5_NAME2_ID3 = 2650 S5_NUM2_ID5_ORIG = 2641 S5_NUM2_ID3_ORIG = 2650 S5_SQ2 = CGGCUGCUAU S5_SQLEN2 = 10 S5_SQ = GUCGGCUGCUAUCU S5_SQLEN = 14 S5_CHAR = A ## Properties of helix 1 H1_INID = 1 H1_OUTID = 15 H1_INID2 = 3 H1_OUTID2 = 13 H1_INID2_ORIG = 2481 H1_OUTID2_ORIG = 2105 H1_INSEQ_CHAR = A H1_OUTSEQ_CHAR = A # Position: H1_P_X = 71.53859935886939 H1_P_Y = 112.37067382754067 H1_P_Z = 83.53577088839383 # Orientation: H1_DX_X = -0.4234867950150516 H1_DX_Y = -0.86086710635918 H1_DX_Z = 0.2820758047700451 H1_DY_X = -0.672706405510894 H1_DY_Y = 0.09029459099600956 H1_DY_Z = -0.7343793153551417 H1_DZ_X = 0.6067330767582177 H1_DZ_Y = -0.5007541432935483 H1_DZ_Z = -0.617349383689529 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 14 H2_INID2 = 3 H2_OUTID2 = 12 H2_INID2_ORIG = 2531 H2_OUTID2_ORIG = 2490 H2_INSEQ_CHAR = A H2_OUTSEQ_CHAR = A # Position: H2_P_X = 63.6900187072308 H2_P_Y = 108.066641549231 H2_P_Z = 115.86894114906345 # Orientation: H2_DX_X = -0.5702318421209043 H2_DX_Y = -0.8135144420538154 H2_DX_Z = -0.11414858212546619 H2_DY_X = 0.820364140020807 H2_DY_Y = -0.5711826720865076 H2_DY_Z = -0.027441444496290046 H2_DZ_X = -0.0428756807447499 H2_DZ_Y = -0.10929138885552447 H2_DZ_Z = 0.9930846229414243 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 17 H3_INID2 = 3 H3_OUTID2 = 15 H3_INID2_ORIG = 2615 H3_OUTID2_ORIG = 2543 H3_INSEQ_CHAR = A H3_OUTSEQ_CHAR = A # Position: H3_P_X = 64.46718649955731 H3_P_Y = 130.39591265573927 H3_P_Z = 114.7976955415539 # Orientation: H3_DX_X = 0.7566226685485304 H3_DX_Y = 0.5288166007624966 H3_DX_Z = 0.38454536819014606 H3_DY_X = -0.42813451391519664 H3_DY_Y = 0.8451984628331957 H3_DY_Z = -0.3199068558487568 H3_DZ_X = -0.494189210154488 H3_DZ_Y = 0.07741163467082401 H3_DZ_Z = 0.8659009547196916 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 13 H4_INID2 = 3 H4_OUTID2 = 11 H4_INID2_ORIG = 2641 H4_OUTID2_ORIG = 2623 H4_INSEQ_CHAR = A H4_OUTSEQ_CHAR = A # Position: H4_P_X = 91.20797812087618 H4_P_Y = 119.3645391281743 H4_P_Z = 95.19823809374658 # Orientation: H4_DX_X = 0.7134013261642593 H4_DX_Y = 0.69423199323154 H4_DX_Z = -0.09539647478203506 H4_DY_X = 0.329330955207098 H4_DY_Y = -0.211989559659699 H4_DY_Z = 0.9201095307286238 H4_DZ_X = 0.6185464168269448 H4_DZ_Y = -0.6878243716015362 H4_DZ_Z = -0.37986571846047923 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 14 H5_INID2 = 3 H5_OUTID2 = 12 H5_INID2_ORIG = 2095 H5_OUTID2_ORIG = 2650 H5_INSEQ_CHAR = A H5_OUTSEQ_CHAR = A # Position: H5_P_X = 48.60110891256272 H5_P_Y = 139.94949530423432 H5_P_Z = 108.08657933881632 # Orientation: H5_DX_X = -0.7325304498020273 H5_DX_Y = -0.6690474409705018 H5_DX_Z = -0.12559722068446888 H5_DY_X = 0.42659341736933243 H5_DY_Y = -0.5949519026600854 H5_DY_Z = 0.6812123676052124 H5_DZ_X = -0.5304876967187653 H5_DZ_Y = 0.4454298544686708 H5_DZ_Z = 0.7212316190919807 ############# END of Description of junction: j43