#############  Start of Description of junction: j41
# Number of strands:
NUM_STRANDS = 5
LILLEY = HS7HS8HS8HS9HS11
FINGERPRINT = 19:27:28:46:110:127:131:150:156:172
LOOP_LENGTH_SUM = 43
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  2479
S1_NAME_ID3 = 2492
S1_NUM_ID5_ORIG =  2479
S1_NUM_ID3_ORIG = 2492
S1_NAME2_ID5 =  2481
S1_NAME2_ID3 = 2490
S1_NUM2_ID5_ORIG =  2481
S1_NUM2_ID3_ORIG = 2490
S1_SQ2 = GGAUAACAGA
S1_SQLEN2 = 10
S1_SQ = AGGGAUAACAGAGU
S1_SQLEN = 14
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  2093
S2_NAME_ID3 = 2107
S2_NUM_ID5_ORIG =  2093
S2_NUM_ID3_ORIG = 2107
S2_NAME2_ID5 =  2095
S2_NAME2_ID3 = 2105
S2_NUM2_ID5_ORIG =  2095
S2_NUM2_ID3_ORIG = 2105
S2_SQ2 = AAGCGAAGACC
S2_SQLEN2 = 11
S2_SQ = GGAAGCGAAGACCCU
S2_SQLEN = 15
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  2529
S3_NAME_ID3 = 2545
S3_NUM_ID5_ORIG =  2529
S3_NUM_ID3_ORIG = 2545
S3_NAME2_ID5 =  2531
S3_NAME2_ID3 = 2543
S3_NUM2_ID5_ORIG =  2531
S3_NUM2_ID3_ORIG = 2543
S3_SQ2 = UACCUCGAUGUCG
S3_SQLEN2 = 13
S3_SQ = GCUACCUCGAUGUCGGU
S3_SQLEN = 17
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  2613
S4_NAME_ID3 = 2625
S4_NUM_ID5_ORIG =  2613
S4_NUM_ID3_ORIG = 2625
S4_NAME2_ID5 =  2615
S4_NAME2_ID3 = 2623
S4_NUM2_ID5_ORIG =  2615
S4_NUM2_ID3_ORIG = 2623
S4_SQ2 = UGGGUUUAG
S4_SQLEN2 = 9
S4_SQ = GCUGGGUUUAGAC
S4_SQLEN = 13
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  2639
S5_NAME_ID3 = 2652
S5_NUM_ID5_ORIG =  2639
S5_NUM_ID3_ORIG = 2652
S5_NAME2_ID5 =  2641
S5_NAME2_ID3 = 2650
S5_NUM2_ID5_ORIG =  2641
S5_NUM2_ID3_ORIG = 2650
S5_SQ2 = CGGCUGCUAU
S5_SQLEN2 = 10
S5_SQ = GUCGGCUGCUAUCU
S5_SQLEN = 14
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 15
H1_INID2 = 3
H1_OUTID2 = 13
H1_INID2_ORIG = 2481
H1_OUTID2_ORIG = 2105
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 71.60020526192787
H1_P_Y = 112.72608761265485
H1_P_Z = 83.6683792291577
# Orientation:
H1_DX_X = -0.4154340861333452
H1_DX_Y = -0.8717366546713663
H1_DX_Z = 0.2597878460993286
H1_DY_X = -0.6674791527003379
H1_DY_Y = 0.09812018432063496
H1_DY_Z = -0.7381354957860538
H1_DZ_X = 0.6179693364471888
H1_DZ_Y = -0.48004961653069245
H1_DZ_Z = -0.6226285127423523
## Properties of helix 2
H2_INID = 1
H2_OUTID = 14
H2_INID2 = 3
H2_OUTID2 = 12
H2_INID2_ORIG = 2531
H2_OUTID2_ORIG = 2490
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 63.50217535987933
H2_P_Y = 108.45520725526644
H2_P_Z = 115.98954028648878
# Orientation:
H2_DX_X = -0.5789550204984621
H2_DX_Y = -0.8093682094354762
H2_DX_Z = -0.09866197745246552
H2_DY_X = 0.8140238993983218
H2_DY_Y = -0.5806825416623411
H2_DY_Z = -0.013148270490816572
H2_DZ_X = -0.04664949568820731
H2_DZ_Y = -0.08792546481974739
H2_DZ_Z = 0.9950341387049377
## Properties of helix 3
H3_INID = 1
H3_OUTID = 17
H3_INID2 = 3
H3_OUTID2 = 15
H3_INID2_ORIG = 2615
H3_OUTID2_ORIG = 2543
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 64.60949014614053
H3_P_Y = 130.7740926461005
H3_P_Z = 114.83959255128485
# Orientation:
H3_DX_X = 0.7441500116996309
H3_DX_Y = 0.5406306470430309
H3_DX_Z = 0.392376430950236
H3_DY_X = -0.4515926348026085
H3_DY_Y = 0.8399626939732627
H3_DY_Z = -0.3008766606522215
H3_DZ_X = -0.4922447077211274
H3_DZ_Y = 0.0467030642572297
H3_DZ_Z = 0.869203066900667
## Properties of helix 4
H4_INID = 1
H4_OUTID = 13
H4_INID2 = 3
H4_OUTID2 = 11
H4_INID2_ORIG = 2641
H4_OUTID2_ORIG = 2623
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 91.43195620633209
H4_P_Y = 119.46834414383879
H4_P_Z = 95.17963567773536
# Orientation:
H4_DX_X = 0.7137435162381962
H4_DX_Y = 0.695642881070242
H4_DX_Z = -0.08155473649159717
H4_DY_X = 0.3126415404715033
H4_DY_Y = -0.21223214132305657
H4_DY_Z = 0.9258578645564626
H4_DZ_X = 0.626757896000953
H4_DZ_Y = -0.6863224462347972
H4_DZ_Z = -0.36896617676251253
## Properties of helix 5
H5_INID = 1
H5_OUTID = 14
H5_INID2 = 3
H5_OUTID2 = 12
H5_INID2_ORIG = 2095
H5_OUTID2_ORIG = 2650
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 48.56780349491658
H5_P_Y = 140.72566257654125
H5_P_Z = 107.95321806745604
# Orientation:
H5_DX_X = -0.7419352838425013
H5_DX_Y = -0.6642092915471665
H5_DX_Z = -0.09142238025754068
H5_DY_X = 0.4283510590573556
H5_DY_Y = -0.5744796369341714
H5_DY_Z = 0.6974872880220886
H5_DZ_X = -0.5157978332583042
H5_DZ_Y = 0.47832955561034396
H5_DZ_Z = 0.7107414659604672
#############  END of Description of junction: j41