#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 3HS2HS4
FINGERPRINT = 78:89:93:101:165:166
LOOP_LENGTH_SUM = 6
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  24
S1_NAME_ID3 = 27
S1_NUM_ID5_ORIG =  24
S1_NUM_ID3_ORIG = 27
S1_NAME2_ID5 =  25
S1_NAME2_ID3 = 26
S1_NUM2_ID5_ORIG =  25
S1_NUM2_ID3_ORIG = 26
S1_SQ2 = CA
S1_SQLEN2 = 2
S1_SQ = GCAC
S1_SQLEN = 4
S1_CHAR = B
## Properties of strand 2
S2_NAME_ID5 =  6
S2_NAME_ID3 = 11
S2_NUM_ID5_ORIG =  6
S2_NUM_ID3_ORIG = 11
S2_NAME2_ID5 =  7
S2_NAME2_ID3 = 10
S2_NUM2_ID5_ORIG =  7
S2_NUM2_ID3_ORIG = 10
S2_SQ2 = AUCG
S2_SQLEN2 = 4
S2_SQ = UAUCGC
S2_SQLEN = 6
S2_CHAR = B
## Properties of strand 3
S3_NAME_ID5 =  43
S3_NAME_ID3 = 50
S3_NUM_ID5_ORIG =  43
S3_NUM_ID3_ORIG = 50
S3_NAME2_ID5 =  44
S3_NAME2_ID3 = 49
S3_NUM2_ID5_ORIG =  44
S3_NUM2_ID3_ORIG = 49
S3_SQ2 = CAUUCC
S3_SQLEN2 = 6
S3_SQ = GCAUUCCG
S3_SQLEN = 8
S3_CHAR = B
## Properties of strand 4
S4_NAME_ID5 =  64
S4_NAME_ID3 = 67
S4_NUM_ID5_ORIG =  64
S4_NUM_ID3_ORIG = 67
S4_NAME2_ID5 =  65
S4_NAME2_ID3 = 66
S4_NUM2_ID5_ORIG =  65
S4_NUM2_ID3_ORIG = 66
S4_SQ2 = GU
S4_SQLEN2 = 2
S4_SQ = CGUA
S4_SQLEN = 4
S4_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 2
H1_OUTID2 = 5
H1_INID2_ORIG = 25
H1_OUTID2_ORIG = 10
H1_INSEQ_CHAR = B
H1_OUTSEQ_CHAR = B
# Position:
H1_P_X = 19.771190679837915
H1_P_Y = 19.278173432453983
H1_P_Z = 29.581957321158683
# Orientation:
H1_DX_X = 0.9737849485062036
H1_DX_Y = -0.09238672949810223
H1_DX_Z = 0.20786429774112491
H1_DY_X = 0.2025865347332214
H1_DY_Y = -0.06334339159732494
H1_DY_Z = -0.977213544055612
H1_DZ_X = 0.103448392967465
H1_DZ_Y = 0.9937063484518909
H1_DZ_Z = -0.042966533940454354
## Properties of helix 2
H2_INID = 1
H2_OUTID = 4
H2_INID2 = 2
H2_OUTID2 = 3
H2_INID2_ORIG = 44
H2_OUTID2_ORIG = 26
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = B
# Position:
H2_P_X = 17.624408456747272
H2_P_Y = 6.033659531916612
H2_P_Z = 25.154392921082746
# Orientation:
H2_DX_X = 0.6896219225024893
H2_DX_Y = 0.06743460640580601
H2_DX_Z = 0.721023007859575
H2_DY_X = -0.7117847847466301
H2_DY_Y = -0.1202318444249606
H2_DY_Z = 0.6920308691014903
H2_DZ_X = 0.1333567553863162
H2_DZ_Y = -0.9904528648275326
H2_DZ_Z = -0.03491558889333035
## Properties of helix 3
H3_INID = 1
H3_OUTID = 8
H3_INID2 = 2
H3_OUTID2 = 7
H3_INID2_ORIG = 65
H3_OUTID2_ORIG = 49
H3_INSEQ_CHAR = B
H3_OUTSEQ_CHAR = B
# Position:
H3_P_X = 20.861989842843734
H3_P_Y = 38.45869066771662
H3_P_Z = 36.878835361347875
# Orientation:
H3_DX_X = 0.11978721869689224
H3_DX_Y = -0.7034782141323817
H3_DX_Z = 0.7005493733335086
H3_DY_X = -0.005801038745765652
H3_DY_Y = 0.7051221988398026
H3_DY_Z = 0.7090620795478983
H3_DZ_X = -0.9927826399501214
H3_DZ_Y = -0.0890004884505089
H3_DZ_Z = 0.08038372266346983
## Properties of helix 4
H4_INID = 1
H4_OUTID = 4
H4_INID2 = 2
H4_OUTID2 = 3
H4_INID2_ORIG = 7
H4_OUTID2_ORIG = 66
H4_INSEQ_CHAR = B
H4_OUTSEQ_CHAR = B
# Position:
H4_P_X = 34.70561042573539
H4_P_Y = 39.019844867298815
H4_P_Z = 36.508345571892896
# Orientation:
H4_DX_X = -0.13762224027936298
H4_DX_Y = -0.7776471377356131
H4_DX_Z = 0.61345337895564
H4_DY_X = 0.03133432643743106
H4_DY_Y = -0.6224547828474059
H4_DY_Z = -0.7820282624669659
H4_DZ_X = 0.9899890297206326
H4_DZ_Y = -0.08840233301214084
H4_DZ_Z = 0.1100306709550054
#############  END of Description of junction: j1