#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = 3HS2HS4
FINGERPRINT = 80:90:92:98:165:171
LOOP_LENGTH_SUM = 6
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  24
S1_NAME_ID3 = 27
S1_NUM_ID5_ORIG =  24
S1_NUM_ID3_ORIG = 27
S1_NAME2_ID5 =  25
S1_NAME2_ID3 = 26
S1_NUM2_ID5_ORIG =  25
S1_NUM2_ID3_ORIG = 26
S1_SQ2 = CA
S1_SQLEN2 = 2
S1_SQ = GCAC
S1_SQLEN = 4
S1_CHAR = B
## Properties of strand 2
S2_NAME_ID5 =  6
S2_NAME_ID3 = 11
S2_NUM_ID5_ORIG =  6
S2_NUM_ID3_ORIG = 11
S2_NAME2_ID5 =  7
S2_NAME2_ID3 = 10
S2_NUM2_ID5_ORIG =  7
S2_NUM2_ID3_ORIG = 10
S2_SQ2 = AUCG
S2_SQLEN2 = 4
S2_SQ = UAUCGC
S2_SQLEN = 6
S2_CHAR = B
## Properties of strand 3
S3_NAME_ID5 =  43
S3_NAME_ID3 = 50
S3_NUM_ID5_ORIG =  43
S3_NUM_ID3_ORIG = 50
S3_NAME2_ID5 =  44
S3_NAME2_ID3 = 49
S3_NUM2_ID5_ORIG =  44
S3_NUM2_ID3_ORIG = 49
S3_SQ2 = CAUUCC
S3_SQLEN2 = 6
S3_SQ = GCAUUCCG
S3_SQLEN = 8
S3_CHAR = B
## Properties of strand 4
S4_NAME_ID5 =  64
S4_NAME_ID3 = 67
S4_NUM_ID5_ORIG =  64
S4_NUM_ID3_ORIG = 67
S4_NAME2_ID5 =  65
S4_NAME2_ID3 = 66
S4_NUM2_ID5_ORIG =  65
S4_NUM2_ID3_ORIG = 66
S4_SQ2 = GU
S4_SQLEN2 = 2
S4_SQ = CGUA
S4_SQLEN = 4
S4_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 6
H1_INID2 = 2
H1_OUTID2 = 5
H1_INID2_ORIG = 25
H1_OUTID2_ORIG = 10
H1_INSEQ_CHAR = B
H1_OUTSEQ_CHAR = B
# Position:
H1_P_X = 19.806421485805483
H1_P_Y = 19.13413054569328
H1_P_Z = 29.768139749507572
# Orientation:
H1_DX_X = 0.9776874672860956
H1_DX_Y = -0.09227046124626526
H1_DX_Z = 0.18871507171687085
H1_DY_X = 0.1860647425138815
H1_DY_Y = -0.03660682464488474
H1_DY_Z = -0.9818553111241322
H1_DZ_X = 0.0975045019727041
H1_DZ_Y = 0.9950608536018386
H1_DZ_Z = -0.018621754059019224
## Properties of helix 2
H2_INID = 1
H2_OUTID = 4
H2_INID2 = 2
H2_OUTID2 = 3
H2_INID2_ORIG = 44
H2_OUTID2_ORIG = 26
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = B
# Position:
H2_P_X = 17.433380592106996
H2_P_Y = 5.406965813519584
H2_P_Z = 25.184603164996435
# Orientation:
H2_DX_X = 0.6840984477067273
H2_DX_Y = 0.050691445281726644
H2_DX_Z = 0.7276260655175157
H2_DY_X = -0.7273742489761261
H2_DY_Y = -0.02669612827768031
H2_DY_Z = 0.6857215314261325
H2_DZ_X = 0.054185014272029264
H2_DZ_Y = -0.99835749814895
H2_DZ_Z = 0.018608872026771195
## Properties of helix 3
H3_INID = 1
H3_OUTID = 8
H3_INID2 = 2
H3_OUTID2 = 7
H3_INID2_ORIG = 65
H3_OUTID2_ORIG = 49
H3_INSEQ_CHAR = B
H3_OUTSEQ_CHAR = B
# Position:
H3_P_X = 20.371484892185777
H3_P_Y = 38.080454482323155
H3_P_Z = 37.04700217021926
# Orientation:
H3_DX_X = 0.1149622262821488
H3_DX_Y = -0.6989266241068108
H3_DX_Z = 0.7058932360087553
H3_DY_X = 0.04822529574657253
H3_DY_Y = 0.7136935693424604
H3_DY_Z = 0.6987959716035661
H3_DZ_X = -0.9921985725541091
H3_DZ_Y = -0.046293230540513264
H3_DZ_Z = 0.1157537447675665
## Properties of helix 4
H4_INID = 1
H4_OUTID = 4
H4_INID2 = 2
H4_OUTID2 = 3
H4_INID2_ORIG = 7
H4_OUTID2_ORIG = 66
H4_INSEQ_CHAR = B
H4_OUTSEQ_CHAR = B
# Position:
H4_P_X = 34.742629764344734
H4_P_Y = 39.03335792288407
H4_P_Z = 36.53449784819339
# Orientation:
H4_DX_X = -0.14775735007732038
H4_DX_Y = -0.7689430094726291
H4_DX_Z = 0.6220083710701232
H4_DY_X = -0.011493800658143982
H4_DY_Y = -0.6275340204478326
H4_DY_Z = -0.7785043003908214
H4_DZ_X = 0.988956853479749
H4_DZ_Y = -0.12217897267431965
H4_DZ_Z = 0.08388468627638446
#############  END of Description of junction: j1