############# Start of Description of junction: j9 # Number of strands: NUM_STRANDS = 3 LILLEY = HS1HS4HS5 FINGERPRINT = 59:122:173 LOOP_LENGTH_SUM = 10 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 321 S1_NAME_ID3 = 325 S1_NUM_ID5_ORIG = 321 S1_NUM_ID3_ORIG = 325 S1_NAME2_ID5 = 322 S1_NAME2_ID3 = 324 S1_NUM2_ID5_ORIG = 322 S1_NUM2_ID3_ORIG = 324 S1_SQ2 = GCG S1_SQLEN2 = 3 S1_SQ = AGCGU S1_SQLEN = 5 S1_CHAR = 3 ## Properties of strand 2 S2_NAME_ID5 = 303 S2_NAME_ID3 = 310 S2_NUM_ID5_ORIG = 303 S2_NUM_ID3_ORIG = 310 S2_NAME2_ID5 = 304 S2_NAME2_ID3 = 309 S2_NUM2_ID5_ORIG = 304 S2_NUM2_ID3_ORIG = 309 S2_SQ2 = GAAGUC S2_SQLEN2 = 6 S2_SQ = CGAAGUCU S2_SQLEN = 8 S2_CHAR = 3 ## Properties of strand 3 S3_NAME_ID5 = 340 S3_NAME_ID3 = 348 S3_NUM_ID5_ORIG = 340 S3_NUM_ID3_ORIG = 348 S3_NAME2_ID5 = 341 S3_NAME2_ID3 = 347 S3_NUM2_ID5_ORIG = 341 S3_NUM2_ID3_ORIG = 347 S3_SQ2 = CCCCGUA S3_SQLEN2 = 7 S3_SQ = ACCCCGUAC S3_SQLEN = 9 S3_CHAR = 3 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 8 H1_INID2 = 2 H1_OUTID2 = 7 H1_INID2_ORIG = 322 H1_OUTID2_ORIG = 309 H1_INSEQ_CHAR = 3 H1_OUTSEQ_CHAR = 3 # Position: H1_P_X = 96.93404321226615 H1_P_Y = -55.3049498423912 H1_P_Z = -11.375320756043047 # Orientation: H1_DX_X = 0.962041359600164 H1_DX_Y = -0.1679798087947546 H1_DX_Z = -0.21507953472132435 H1_DY_X = -0.2556784952531501 H1_DY_Y = -0.2792254078319516 H1_DY_Z = -0.9255601972244545 H1_DZ_X = 0.09541975415892523 H1_DZ_Y = 0.9454184023269079 H1_DZ_Z = -0.3115752157311107 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 5 H2_INID2 = 2 H2_OUTID2 = 4 H2_INID2_ORIG = 341 H2_OUTID2_ORIG = 324 H2_INSEQ_CHAR = 3 H2_OUTSEQ_CHAR = 3 # Position: H2_P_X = 91.91925776842251 H2_P_Y = -68.35144044112768 H2_P_Z = -5.166708656200202 # Orientation: H2_DX_X = 0.9197569063059774 H2_DX_Y = -0.08809117478854489 H2_DX_Z = 0.3824750687650402 H2_DY_X = -0.33272292298420325 H2_DY_Y = 0.3419022644320222 H2_DY_Z = 0.8788619334668581 H2_DZ_X = -0.20818907229558192 H2_DZ_Y = -0.9355975558436569 H2_DZ_Z = 0.2851570158282586 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 9 H3_INID2 = 2 H3_OUTID2 = 8 H3_INID2_ORIG = 304 H3_OUTID2_ORIG = 347 H3_INSEQ_CHAR = 3 H3_OUTSEQ_CHAR = 3 # Position: H3_P_X = 87.50473210606333 H3_P_Y = -59.914233003264194 H3_P_Z = 21.34702167016627 # Orientation: H3_DX_X = 0.1359793925902011 H3_DX_Y = -0.9697575646532144 H3_DX_Z = -0.20268169771508582 H3_DY_X = 0.975548549051112 H3_DY_Y = 0.09540999736984901 H3_DY_Z = 0.1979948505546716 H3_DZ_X = -0.17266914384185839 H3_DZ_Y = -0.22464905563957416 H3_DZ_Z = 0.9590193786181622 ############# END of Description of junction: j9