#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 35:66:75:83:106:109:118:118:127:168
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.34859204402379
H1_P_Y = 44.71614841202202
H1_P_Z = 9.246800930469515
# Orientation:
H1_DX_X = -0.12005938991141818
H1_DX_Y = 0.8145975264453469
H1_DX_Z = 0.5674650762850639
H1_DY_X = -0.9410750745715291
H1_DY_Y = 0.08865610583569605
H1_DY_Z = -0.32637064653278713
H1_DZ_X = -0.31616996523116825
H1_DZ_Y = -0.5732110996894306
H1_DZ_Z = 0.7559534299667909
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.04164287054456
H2_P_Y = 70.44350567625489
H2_P_Z = -0.5837067066847486
# Orientation:
H2_DX_X = 0.8314221542515838
H2_DX_Y = -0.438445483866829
H2_DX_Z = 0.34132500508524255
H2_DY_X = 0.3364022258679995
H2_DY_Y = -0.09171440315699897
H2_DY_Z = -0.9372417034493183
H2_DZ_X = 0.44223381129296513
H2_DZ_Y = 0.8940660075913485
H2_DZ_Z = 0.07124065004589686
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 133.7068315345236
H3_P_Y = 49.78782818553308
H3_P_Z = -7.277611617332771
# Orientation:
H3_DX_X = 0.5683964606746201
H3_DX_Y = 0.49142374755145113
H3_DX_Z = -0.6598698082463228
H3_DY_X = -0.22491251176316496
H3_DY_Y = -0.6786691003030327
H3_DY_Z = -0.6991585044510602
H3_DZ_X = -0.7914163414694713
H3_DZ_Y = 0.5458121953899067
H3_DZ_Z = -0.27522576517961816
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 144.60684686547978
H4_P_Y = 38.10323762610627
H4_P_Z = -2.9443418026449377
# Orientation:
H4_DX_X = 0.4527971523025087
H4_DX_Y = 0.6603700438823452
H4_DX_Z = 0.5990710675784339
H4_DY_X = -0.608676856983493
H4_DY_Y = -0.2620311879557278
H4_DY_Z = 0.7489006211181901
H4_DZ_X = 0.6515268395388318
H4_DZ_Y = -0.7037407631232853
H4_DZ_Z = 0.2833049870355575
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.0321933842403
H5_P_Y = 55.67179371485495
H5_P_Z = 10.423271641289112
# Orientation:
H5_DX_X = -0.3767791328048702
H5_DX_Y = 0.5537608686930255
H5_DX_Z = 0.7425539612628569
H5_DY_X = 0.29788603789631907
H5_DY_Y = -0.686613603228885
H5_DY_Z = 0.6631935375797067
H5_DZ_X = 0.8770982804163054
H5_DZ_Y = 0.47107394341590236
H5_DZ_Z = 0.09374404687960336
#############  END of Description of junction: j1