#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 36:65:75:81:108:108:114:124:127:171
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.48992143732656
H1_P_Y = 44.67096286076771
H1_P_Z = 9.13525862321297
# Orientation:
H1_DX_X = -0.11933017413313962
H1_DX_Y = 0.8132925014498298
H1_DX_Z = 0.569487152293032
H1_DY_X = -0.9347493844296935
H1_DY_Y = 0.10131512512908358
H1_DY_Z = -0.34055665274426516
H1_DZ_X = -0.3346698340897376
H1_DZ_Y = -0.5729664497207096
H1_DZ_Z = 0.7481347135675467
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.27980480112024
H2_P_Y = 70.3986239525855
H2_P_Z = -0.6582247201541107
# Orientation:
H2_DX_X = 0.8214391579911648
H2_DX_Y = -0.4414600443747503
H2_DX_Z = 0.361041187317204
H2_DY_X = 0.35949391568829014
H2_DY_Y = -0.09063000043730085
H2_DY_Z = -0.9287358761261578
H2_DZ_X = 0.44272094405152984
H2_DZ_Y = 0.8926921262346781
H2_DZ_Z = 0.0842551687242401
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 133.86958739852446
H3_P_Y = 49.89459580560826
H3_P_Z = -7.263878480857322
# Orientation:
H3_DX_X = 0.6067470681770715
H3_DX_Y = 0.45748475521237
H3_DX_Z = -0.6500505318871941
H3_DY_X = -0.24504175282464757
H3_DY_Y = -0.6703072451583907
H3_DY_Z = -0.7004589470203078
H3_DZ_X = -0.7561828711569376
H3_DZ_Y = 0.5842909342411957
H3_DZ_Z = -0.2946040894698996
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 144.9640098485249
H4_P_Y = 38.1560605090512
H4_P_Z = -2.768419349971619
# Orientation:
H4_DX_X = 0.41202788075642616
H4_DX_Y = 0.6758634312778113
H4_DX_Z = 0.6110987217632893
H4_DY_X = -0.6412843751932371
H4_DY_Y = -0.26134605666600663
H4_DY_Z = 0.7214240007084349
H4_DZ_X = 0.6472923416914398
H4_DZ_Y = -0.6891348641060802
H4_DZ_Z = 0.32573879637079184
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 141.6445862408459
H5_P_Y = 56.22743784774974
H5_P_Z = 9.910170117169292
# Orientation:
H5_DX_X = -0.3019675221340776
H5_DX_Y = 0.554312514325396
H5_DX_Z = 0.7755986410756854
H5_DY_X = 0.3530782464408162
H5_DY_Y = -0.6906910606585441
H5_DY_Z = 0.6310955637751334
H5_DZ_X = 0.8855232167856855
H5_DZ_Y = 0.4644173717558644
H5_DZ_Z = 0.012850577609018643
#############  END of Description of junction: j1