#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = HS1HS1HS2HS2
FINGERPRINT = 11:12:168:169:177:177
LOOP_LENGTH_SUM = 6
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  6
S1_NAME_ID3 = 11
S1_NUM_ID5_ORIG =  6
S1_NUM_ID3_ORIG = 11
S1_NAME2_ID5 =  7
S1_NAME2_ID3 = 10
S1_NUM2_ID5_ORIG =  7
S1_NUM2_ID3_ORIG = 10
S1_SQ2 = GAAG
S1_SQLEN2 = 4
S1_SQ = UGAAGC
S1_SQLEN = 6
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  14
S2_NAME_ID3 = 18
S2_NUM_ID5_ORIG =  14
S2_NUM_ID3_ORIG = 18
S2_NAME2_ID5 =  15
S2_NAME2_ID3 = 17
S2_NUM2_ID5_ORIG =  15
S2_NUM2_ID3_ORIG = 17
S2_SQ2 = CAC
S2_SQLEN2 = 3
S2_SQ = GCACG
S2_SQLEN = 5
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  14
S3_NAME_ID3 = 18
S3_NUM_ID5_ORIG =  14
S3_NUM_ID3_ORIG = 18
S3_NAME2_ID5 =  15
S3_NAME2_ID3 = 17
S3_NUM2_ID5_ORIG =  15
S3_NUM2_ID3_ORIG = 17
S3_SQ2 = CAC
S3_SQLEN2 = 3
S3_SQ = GCACG
S3_SQLEN = 5
S3_CHAR = B
## Properties of strand 4
S4_NAME_ID5 =  6
S4_NAME_ID3 = 11
S4_NUM_ID5_ORIG =  6
S4_NUM_ID3_ORIG = 11
S4_NAME2_ID5 =  7
S4_NAME2_ID3 = 10
S4_NUM2_ID5_ORIG =  7
S4_NUM2_ID3_ORIG = 10
S4_SQ2 = GAAG
S4_SQLEN2 = 4
S4_SQ = UGAAGC
S4_SQLEN = 6
S4_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 5
H1_INID2 = 2
H1_OUTID2 = 4
H1_INID2_ORIG = 7
H1_OUTID2_ORIG = 17
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 25.149484932538087
H1_P_Y = 72.49611576122314
H1_P_Z = 57.088303658900635
# Orientation:
H1_DX_X = -0.5769470985939371
H1_DX_Y = 0.06091211947257591
H1_DX_Z = 0.8145070651169348
H1_DY_X = 0.7942602978570541
H1_DY_Y = -0.1907186870547406
H1_DY_Z = 0.5768682359569937
H1_DZ_X = 0.19047998496446183
H1_DZ_Y = 0.979753079152843
H1_DZ_Z = 0.06165451498848995
## Properties of helix 2
H2_INID = 1
H2_OUTID = 6
H2_INID2 = 2
H2_OUTID2 = 5
H2_INID2_ORIG = 15
H2_OUTID2_ORIG = 10
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 17.219111051662836
H2_P_Y = 54.98997095784723
H2_P_Z = 58.24410399770436
# Orientation:
H2_DX_X = 0.9134690020529206
H2_DX_Y = -0.35038632460140917
H2_DX_Z = 0.20689080651580127
H2_DY_X = 0.18905847511354068
H2_DY_Y = -0.08476993479088435
H2_DY_Z = -0.9783000312497663
H2_DZ_X = 0.36032107248422207
H2_DZ_Y = 0.932761213648952
H2_DZ_Z = -0.011191203507742387
## Properties of helix 3
H3_INID = 1
H3_OUTID = 5
H3_INID2 = 2
H3_OUTID2 = 4
H3_INID2_ORIG = 7
H3_OUTID2_ORIG = 17
H3_INSEQ_CHAR = B
H3_OUTSEQ_CHAR = B
# Position:
H3_P_X = 12.326664816206902
H3_P_Y = 40.835144807396134
H3_P_Z = 57.22829844131788
# Orientation:
H3_DX_X = 0.3246018888705198
H3_DX_Y = -0.062105025444012085
H3_DX_Z = 0.9438096098028907
H3_DY_X = -0.9281540869417313
H3_DY_Y = 0.17120413173475413
H3_DY_Z = 0.33048318591164616
H3_DZ_X = -0.18210877143908277
H3_DZ_Y = -0.9832762130203037
H3_DZ_Z = -0.0020698486419377105
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 2
H4_OUTID2 = 5
H4_INID2_ORIG = 15
H4_OUTID2_ORIG = 10
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = B
# Position:
H4_P_X = 19.208191526436277
H4_P_Y = 58.274069041980795
H4_P_Z = 58.126156192746144
# Orientation:
H4_DX_X = -0.9208268737559706
H4_DX_Y = 0.38946592201407526
H4_DX_Z = -0.019853567904149827
H4_DY_X = 0.02596297246232382
H4_DY_Y = 0.01042865926494585
H4_DY_Z = -0.9996085069300165
H4_DZ_X = -0.38910640270974994
H4_DZ_Y = -0.9209818340530163
H4_DZ_Z = -0.01971468271667476
#############  END of Description of junction: j1