############# Start of Description of junction: j3 # Number of strands: NUM_STRANDS = 5 LILLEY = 2HS1HS1HS3HS5 FINGERPRINT = 27:74:77:87:97:102:123:156:160:167 LOOP_LENGTH_SUM = 10 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 114 S1_NAME_ID3 = 120 S1_NUM_ID5_ORIG = 114 S1_NUM_ID3_ORIG = 120 S1_NAME2_ID5 = 115 S1_NAME2_ID3 = 119 S1_NUM2_ID5_ORIG = 115 S1_NUM2_ID3_ORIG = 119 S1_SQ2 = GAAUG S1_SQLEN2 = 5 S1_SQ = CGAAUGG S1_SQLEN = 7 S1_CHAR = 0 ## Properties of strand 2 S2_NAME_ID5 = 45 S2_NAME_ID3 = 53 S2_NUM_ID5_ORIG = 45 S2_NUM_ID3_ORIG = 53 S2_NAME2_ID5 = 46 S2_NAME2_ID3 = 52 S2_NUM2_ID5_ORIG = 46 S2_NUM2_ID3_ORIG = 52 S2_SQ2 = CGAUGAA S2_SQLEN2 = 7 S2_SQ = CCGAUGAAG S2_SQLEN = 9 S2_CHAR = 0 ## Properties of strand 3 S3_NAME_ID5 = 127 S3_NAME_ID3 = 130 S3_NUM_ID5_ORIG = 127 S3_NUM_ID3_ORIG = 130 S3_NAME2_ID5 = 128 S3_NAME2_ID3 = 129 S3_NUM2_ID5_ORIG = 128 S3_NUM2_ID3_ORIG = 129 S3_SQ2 = CA S3_SQLEN2 = 2 S3_SQ = CCAC S3_SQLEN = 4 S3_CHAR = 0 ## Properties of strand 4 S4_NAME_ID5 = 141 S4_NAME_ID3 = 145 S4_NUM_ID5_ORIG = 141 S4_NUM_ID3_ORIG = 145 S4_NAME2_ID5 = 142 S4_NAME2_ID3 = 144 S4_NUM2_ID5_ORIG = 142 S4_NUM2_ID3_ORIG = 144 S4_SQ2 = UAU S4_SQLEN2 = 3 S4_SQ = GUAUC S4_SQLEN = 5 S4_CHAR = 0 ## Properties of strand 5 S5_NAME_ID5 = 152 S5_NAME_ID3 = 156 S5_NUM_ID5_ORIG = 152 S5_NUM_ID3_ORIG = 156 S5_NAME2_ID5 = 153 S5_NAME2_ID3 = 155 S5_NUM2_ID5_ORIG = 153 S5_NUM2_ID3_ORIG = 155 S5_SQ2 = AUG S5_SQLEN2 = 3 S5_SQ = GAUGG S5_SQLEN = 5 S5_CHAR = 0 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 9 H1_INID2 = 2 H1_OUTID2 = 8 H1_INID2_ORIG = 115 H1_OUTID2_ORIG = 52 H1_INSEQ_CHAR = 0 H1_OUTSEQ_CHAR = 0 # Position: H1_P_X = -0.48084478835543276 H1_P_Y = 166.7807196775095 H1_P_Z = 123.99947292762751 # Orientation: H1_DX_X = 0.555225652898681 H1_DX_Y = -0.5711167698226802 H1_DX_Z = -0.6046074012038929 H1_DY_X = 0.6640536911446671 H1_DY_Y = -0.1332764683646701 H1_DY_Z = 0.7357105940907616 H1_DZ_X = -0.5007565972010442 H1_DZ_Y = -0.8099771714113615 H1_DZ_Z = 0.3052536849115768 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 7 H2_INID2 = 2 H2_OUTID2 = 6 H2_INID2_ORIG = 128 H2_OUTID2_ORIG = 119 H2_INSEQ_CHAR = 0 H2_OUTSEQ_CHAR = 0 # Position: H2_P_X = 9.794058048190559 H2_P_Y = 173.7478452306089 H2_P_Z = 131.85367883823878 # Orientation: H2_DX_X = 0.543400432122521 H2_DX_Y = 0.835687479576535 H2_DX_Z = 0.07963922932856349 H2_DY_X = 0.4793399472078299 H2_DY_Y = -0.386764452598527 H2_DY_Z = 0.7878111913504142 H2_DZ_X = 0.6891655718184477 H2_DZ_Y = -0.3899226778287641 H2_DZ_Z = -0.6107463630141297 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 4 H3_INID2 = 2 H3_OUTID2 = 3 H3_INID2_ORIG = 142 H3_OUTID2_ORIG = 129 H3_INSEQ_CHAR = 0 H3_OUTSEQ_CHAR = 0 # Position: H3_P_X = 1.2627764043002445 H3_P_Y = 182.55286903651583 H3_P_Z = 137.9917913342643 # Orientation: H3_DX_X = 0.826981742666216 H3_DX_Y = 0.502452875037875 H3_DX_Z = 0.25227426674734943 H3_DY_X = -0.2086470830916125 H3_DY_Y = 0.6909314742468666 H3_DY_Z = -0.6921561186700558 H3_DZ_X = -0.5220800628391263 H3_DZ_Y = 0.5197641833189266 H3_DZ_Z = 0.6762230414032615 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 5 H4_INID2 = 2 H4_OUTID2 = 4 H4_INID2_ORIG = 153 H4_OUTID2_ORIG = 144 H4_INSEQ_CHAR = 0 H4_OUTSEQ_CHAR = 0 # Position: H4_P_X = 7.793888810265866 H4_P_Y = 190.89581130534012 H4_P_Z = 117.79898914268945 # Orientation: H4_DX_X = 0.9527113600941419 H4_DX_Y = -0.2647887553917485 H4_DX_Z = -0.1490905072955968 H4_DY_X = -0.17708521677694478 H4_DY_Y = -0.08507189099375978 H4_DY_Z = -0.9805119067924721 H4_DZ_X = 0.2469451160615037 H4_DZ_Y = 0.9605465571125933 H4_DZ_Z = -0.12793913112309951 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 5 H5_INID2 = 2 H5_OUTID2 = 4 H5_INID2_ORIG = 46 H5_OUTID2_ORIG = 155 H5_INSEQ_CHAR = 0 H5_OUTSEQ_CHAR = 0 # Position: H5_P_X = 10.085458157187464 H5_P_Y = 171.731639417522 H5_P_Z = 105.0068551080561 # Orientation: H5_DX_X = -0.011390377817781072 H5_DX_Y = -0.41075552684995387 H5_DX_Z = 0.9116743697479848 H5_DY_X = -0.8224903278749558 H5_DY_Y = -0.5146559543310616 H5_DY_Z = -0.24215472166306995 H5_DZ_X = 0.5686650330777479 H5_DZ_Y = -0.752601585059324 H5_DZ_Z = -0.331980322189267 ############# END of Description of junction: j3