#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS5HS2
FINGERPRINT = 34:68:72:82:104:105:116:117:126:172
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  104
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  104
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  106
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  106
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = CGGACGG
S1_SQLEN2 = 7
S1_SQ = GGCGGACGGGU
S1_SQLEN = 11
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 63
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 63
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 61
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 61
S2_SQ2 = CAAG
S2_SQLEN2 = 4
S2_SQ = UGCAAGUC
S2_SQLEN = 8
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 106
H1_OUTID2_ORIG = 61
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 189.87052361799587
H1_P_Y = 116.93771996896753
H1_P_Z = 38.249903366008155
# Orientation:
H1_DX_X = -0.46065910852564684
H1_DX_Y = 0.8826107581607658
H1_DX_Z = -0.09376265413910545
H1_DY_X = 0.1796033238205723
H1_DY_Y = -0.010759630955064381
H1_DY_Z = -0.983680271436981
H1_DZ_X = -0.8692156417166927
H1_DZ_Y = -0.46998136124805967
H1_DZ_Z = -0.15356330380165417
## Properties of helix 2
H2_INID = 1
H2_OUTID = 11
H2_INID2 = 3
H2_OUTID2 = 9
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 209.29729208251234
H2_P_Y = 139.94813889124154
H2_P_Z = 56.48549816765948
# Orientation:
H2_DX_X = 0.03251413180902318
H2_DX_Y = -0.6775129739421004
H2_DX_Z = 0.7347918081829761
H2_DY_X = 0.9868279204133898
H2_DY_Y = -0.0948058309705857
H2_DY_Z = -0.1310820731701554
H2_DZ_X = 0.1584723531891541
H2_DZ_Y = 0.7293750918108515
H2_DZ_Z = 0.6655061898439456
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 214.88660936616753
H3_P_Y = 120.15325537924797
H3_P_Z = 50.64239418502105
# Orientation:
H3_DX_X = 0.8578529271560456
H3_DX_Y = 0.3414504285442064
H3_DX_Z = 0.3840572356001317
H3_DY_X = 0.5135042344087424
H3_DY_Y = -0.5404051801010326
H3_DY_Z = -0.6665400532333052
H3_DZ_X = -0.020043867244794455
H3_DZ_Y = 0.7690083524689157
H3_DZ_Z = -0.6389244064980701
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 214.62340544299693
H4_P_Y = 105.04849862885169
H4_P_Z = 58.967582522615615
# Orientation:
H4_DX_X = -0.3252503862324261
H4_DX_Y = 0.5374652319146662
H4_DX_Z = 0.778038116507517
H4_DY_X = -0.9427351819424246
H4_DY_Y = -0.11998956185684051
H4_DY_Z = -0.3112119563471367
H4_DZ_X = -0.07390915358507755
H4_DZ_Y = -0.8347057143258922
H4_DZ_Z = 0.5457140345345977
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 202.39073459101513
H5_P_Y = 122.48503829155395
H5_P_Z = 66.91957101620818
# Orientation:
H5_DX_X = -0.8048236176553019
H5_DX_Y = 0.5889940251486507
H5_DX_Z = 0.07310938929737176
H5_DY_X = -0.5409465839082941
H5_DY_Y = -0.7786372765506115
H5_DY_Z = 0.3179634962126556
H5_DZ_X = 0.24420429525741838
H5_DZ_Y = 0.21635625691214955
H5_DZ_Z = 0.9452799756012951
#############  END of Description of junction: j1