#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS5HS2
FINGERPRINT = 38:67:72:82:103:109:119:120:130:168
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  104
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  104
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  106
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  106
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = CGGACGG
S1_SQLEN2 = 7
S1_SQ = GGCGGACGGGU
S1_SQLEN = 11
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 63
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 63
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 61
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 61
S2_SQ2 = CAAG
S2_SQLEN2 = 4
S2_SQ = UGCAAGUC
S2_SQLEN = 8
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 106
H1_OUTID2_ORIG = 61
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -136.78582912307354
H1_P_Y = 90.44456882251056
H1_P_Z = -71.95810617279734
# Orientation:
H1_DX_X = -0.8908176317566188
H1_DX_Y = 0.45300218554972105
H1_DX_Z = 0.03511362753565095
H1_DY_X = 0.11878239582213723
H1_DY_Y = 0.1575938680894069
H1_DY_Z = 0.9803340834549061
H1_DZ_X = 0.43855978998797696
H1_DZ_Y = 0.8774697673582779
H1_DZ_Z = -0.1941960812630299
## Properties of helix 2
H2_INID = 1
H2_OUTID = 11
H2_INID2 = 3
H2_OUTID2 = 9
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -159.6712773408637
H2_P_Y = 64.43027696114805
H2_P_Z = -78.3803243655797
# Orientation:
H2_DX_X = 0.5794785876450135
H2_DX_Y = -0.2646274686988903
H2_DX_Z = -0.7708286899635652
H2_DY_X = 0.22283360918373774
H2_DY_Y = -0.8583301811217794
H2_DY_Z = 0.4621844683604053
H2_DZ_X = -0.7839322350044426
H2_DZ_Y = -0.43959254200392195
H2_DZ_Z = -0.4384160671502002
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -138.69775345792243
H3_P_Y = 62.73520384933544
H3_P_Z = -72.93465295197755
# Orientation:
H3_DX_X = -0.27128553300397584
H3_DX_Y = -0.9610422848615912
H3_DX_Z = 0.05293284699284584
H3_DY_X = 0.6663995490103218
H3_DY_Y = -0.1478623455805419
H3_DY_Z = 0.7307861300259191
H3_DZ_X = -0.6944895972306426
H3_DZ_Y = 0.23352613015984502
H3_DZ_Z = 0.6805510604436478
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = -124.09047553124746
H4_P_Y = 60.97984362123544
H4_P_Z = -82.232013875017
# Orientation:
H4_DX_X = -0.5985177820624585
H4_DX_Y = -0.07246191524958334
H4_DX_Z = -0.797825629691971
H4_DY_X = 0.026055022266262995
H4_DY_Y = 0.9936132180197603
H4_DY_Z = -0.10979029461263679
H4_DZ_X = 0.8006857063603263
H4_DZ_Y = -0.08649880816976463
H4_DZ_Z = -0.5928071826618435
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = -142.99010025671976
H5_P_Y = 67.63041420774005
H5_P_Z = -92.31278493769682
# Orientation:
H5_DX_X = -0.7028463496727113
H5_DX_Y = 0.6465156858300531
H5_DX_Z = -0.29668919213119693
H5_DY_X = 0.6685916265138587
H5_DY_Y = 0.45799368010506214
H5_DY_Z = -0.5858558064399375
H5_DZ_X = -0.2428831935464757
H5_DZ_Y = -0.6101305245269373
H5_DZ_Z = -0.7541541601908364
#############  END of Description of junction: j1