#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 4
LILLEY = HS1HS1HS2HS2
FINGERPRINT = 11:12:169:169:179:179
LOOP_LENGTH_SUM = 6
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  6
S1_NAME_ID3 = 11
S1_NUM_ID5_ORIG =  6
S1_NUM_ID3_ORIG = 11
S1_NAME2_ID5 =  7
S1_NAME2_ID3 = 10
S1_NUM2_ID5_ORIG =  7
S1_NUM2_ID3_ORIG = 10
S1_SQ2 = GAAG
S1_SQLEN2 = 4
S1_SQ = UGAAGC
S1_SQLEN = 6
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  14
S2_NAME_ID3 = 18
S2_NUM_ID5_ORIG =  14
S2_NUM_ID3_ORIG = 18
S2_NAME2_ID5 =  15
S2_NAME2_ID3 = 17
S2_NUM2_ID5_ORIG =  15
S2_NUM2_ID3_ORIG = 17
S2_SQ2 = CAC
S2_SQLEN2 = 3
S2_SQ = GCACG
S2_SQLEN = 5
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  14
S3_NAME_ID3 = 18
S3_NUM_ID5_ORIG =  14
S3_NUM_ID3_ORIG = 18
S3_NAME2_ID5 =  15
S3_NAME2_ID3 = 17
S3_NUM2_ID5_ORIG =  15
S3_NUM2_ID3_ORIG = 17
S3_SQ2 = CAC
S3_SQLEN2 = 3
S3_SQ = GCACG
S3_SQLEN = 5
S3_CHAR = B
## Properties of strand 4
S4_NAME_ID5 =  6
S4_NAME_ID3 = 11
S4_NUM_ID5_ORIG =  6
S4_NUM_ID3_ORIG = 11
S4_NAME2_ID5 =  7
S4_NAME2_ID3 = 10
S4_NUM2_ID5_ORIG =  7
S4_NUM2_ID3_ORIG = 10
S4_SQ2 = GAAG
S4_SQLEN2 = 4
S4_SQ = UGAAGC
S4_SQLEN = 6
S4_CHAR = B
## Properties of helix 1
H1_INID = 1
H1_OUTID = 5
H1_INID2 = 2
H1_OUTID2 = 4
H1_INID2_ORIG = 7
H1_OUTID2_ORIG = 17
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 25.259504214000607
H1_P_Y = 72.81586671343774
H1_P_Z = 59.001869184272515
# Orientation:
H1_DX_X = -0.5511787392533662
H1_DX_Y = 0.08960627549673461
H1_DX_Z = 0.829561759477059
H1_DY_X = 0.8131861047407618
H1_DY_Y = -0.16500929705051703
H1_DY_Z = 0.558122111140058
H1_DZ_X = 0.18689664644294623
H1_DZ_Y = 0.9822131373986451
H1_DZ_Z = 0.018083038181863742
## Properties of helix 2
H2_INID = 1
H2_OUTID = 6
H2_INID2 = 2
H2_OUTID2 = 5
H2_INID2_ORIG = 15
H2_OUTID2_ORIG = 10
H2_INSEQ_CHAR = B
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 17.32043940554327
H2_P_Y = 55.19157575548265
H2_P_Z = 59.753495977346894
# Orientation:
H2_DX_X = 0.9108038117733877
H2_DX_Y = -0.36077521501712795
H2_DX_Z = 0.20069295126738496
H2_DY_X = 0.1858194940591531
H2_DY_Y = -0.07584822591596208
H2_DY_Z = -0.9796520618326667
H2_DZ_X = 0.3686563875571238
H2_DZ_Y = 0.9295634947945999
H2_DZ_Z = -0.002043785356939054
## Properties of helix 3
H3_INID = 1
H3_OUTID = 5
H3_INID2 = 2
H3_OUTID2 = 4
H3_INID2_ORIG = 7
H3_OUTID2_ORIG = 17
H3_INSEQ_CHAR = B
H3_OUTSEQ_CHAR = B
# Position:
H3_P_X = 12.193994098920484
H3_P_Y = 41.04607658281689
H3_P_Z = 58.814445049082906
# Orientation:
H3_DX_X = 0.34889451921538495
H3_DX_Y = -0.07148921443749146
H3_DX_Z = 0.9344313279640062
H3_DY_X = -0.9198439849061018
H3_DY_Y = 0.16467518751345267
H3_DY_Z = 0.3560465223105993
H3_DZ_X = -0.17933114033409758
H3_DZ_Y = -0.9837537165553769
H3_DZ_Z = -0.008304653511778781
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 2
H4_OUTID2 = 5
H4_INID2_ORIG = 15
H4_OUTID2_ORIG = 10
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = B
# Position:
H4_P_X = 18.978330869791417
H4_P_Y = 58.701089425228695
H4_P_Z = 59.884221918445434
# Orientation:
H4_DX_X = -0.9250368756862848
H4_DX_Y = 0.3785460002184351
H4_DX_Z = -0.03177584521583299
H4_DY_X = 0.032108190001498116
H4_DY_Y = -0.005435883838529776
H4_DY_Z = -0.9994696169977928
H4_DZ_X = -0.3785179556578342
H4_DZ_Y = -0.9255665167266542
H4_DZ_Z = -0.0071260338967320536
#############  END of Description of junction: j1