#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS5HS2
FINGERPRINT = 38:66:73:82:105:109:118:120:128:169
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  104
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  104
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  106
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  106
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = CGGACGG
S1_SQLEN2 = 7
S1_SQ = GGCGGACGGGU
S1_SQLEN = 11
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 63
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 63
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 61
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 61
S2_SQ2 = CAAG
S2_SQLEN2 = 4
S2_SQ = UGCAAGUC
S2_SQLEN = 8
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = CA
S4_SQLEN2 = 2
S4_SQ = CCCACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 106
H1_OUTID2_ORIG = 61
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -137.0222158300969
H1_P_Y = 90.78712560643397
H1_P_Z = -71.54117642261689
# Orientation:
H1_DX_X = -0.8785807786914006
H1_DX_Y = 0.4771768447858733
H1_DX_Z = 0.019951794762306463
H1_DY_X = 0.11153957420438587
H1_DY_Y = 0.16438850771305624
H1_DY_Z = 0.9800690495665094
H1_DZ_X = 0.4643864109772551
H1_DZ_Y = 0.8632952434318639
H1_DZ_Z = -0.19765268520207258
## Properties of helix 2
H2_INID = 1
H2_OUTID = 11
H2_INID2 = 3
H2_OUTID2 = 9
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -159.7009357929843
H2_P_Y = 64.84271734497337
H2_P_Z = -78.38362438764098
# Orientation:
H2_DX_X = 0.5697300910018441
H2_DX_Y = -0.2675850713818022
H2_DX_Z = -0.7770494533687042
H2_DY_X = 0.18475387238845542
H2_DY_Y = -0.8796048766591014
H2_DY_Z = 0.4383620280031124
H2_DZ_X = -0.8007956231427045
H2_DZ_Y = -0.3933109336531686
H2_DZ_Z = -0.45169998829352664
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -138.7946236217871
H3_P_Y = 63.072679820698184
H3_P_Z = -73.10919113540675
# Orientation:
H3_DX_X = -0.28730143707343814
H3_DX_Y = -0.9573735526344436
H3_DX_Z = 0.029895902255375972
H3_DY_X = 0.6704663584844468
H3_DY_Y = -0.17871612092533695
H3_DY_Z = 0.7200940287643078
H3_DZ_X = -0.6840560988662787
H3_DZ_Y = 0.22692824601074335
H3_DZ_Z = 0.6932321579141671
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = -124.10568545929193
H4_P_Y = 60.96934892357264
H4_P_Z = -82.33537281704106
# Orientation:
H4_DX_X = -0.6061886858654901
H4_DX_Y = -0.05007410327817041
H4_DX_Z = -0.7937429441006429
H4_DY_X = 0.047241231861931965
H4_DY_Y = 0.9939867905671775
H4_DY_Z = -0.09878525289808238
H4_DZ_X = 0.7939165844979215
H4_DZ_Y = -0.09737989709821449
H4_DZ_Z = -0.6001779840183161
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = -143.3093000568543
H5_P_Y = 68.06257347157161
H5_P_Z = -92.66457565195657
# Orientation:
H5_DX_X = -0.7005005555310504
H5_DX_Y = 0.6527805172444374
H5_DX_Z = -0.28840348126671245
H5_DY_X = 0.6632486093077148
H5_DY_Y = 0.4463173203066759
H5_DY_Z = -0.6007513061539385
H5_DZ_X = -0.2634392794403482
H5_DZ_Y = -0.6121098315664995
H5_DZ_Z = -0.7456013010635019
#############  END of Description of junction: j1