#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 2HS1HS3HS4HS1
FINGERPRINT = 37:64:70:82:106:109:113:118:127:172
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 341
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 341
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 339
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 339
S4_SQ2 = CAC
S4_SQLEN2 = 3
S4_SQ = CCCACUC
S4_SQLEN = 7
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  348
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  348
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  350
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  350
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GGCAG
S5_SQLEN2 = 5
S5_SQ = GAGGCAGCA
S5_SQLEN = 9
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 393.72209592332376
H1_P_Y = 110.42742602949525
H1_P_Z = 36.044142442298906
# Orientation:
H1_DX_X = -0.7221668383476754
H1_DX_Y = -0.3530144358174283
H1_DX_Z = 0.5948578533527638
H1_DY_X = 0.16977360580381173
H1_DY_Y = -0.9241228468650036
H1_DY_Z = -0.34230671432868576
H1_DZ_X = 0.670560944555632
H1_DZ_Y = -0.1462113949274908
H1_DZ_Z = 0.7273034082348602
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 364.4128629090105
H2_P_Y = 118.6635164342983
H2_P_Z = 27.153041694138874
# Orientation:
H2_DX_X = 0.2219865013818776
H2_DX_Y = 0.9124941736059782
H2_DX_Z = 0.3436224328232669
H2_DY_X = -0.03308978628172099
H2_DY_Y = 0.3592624211757425
H2_DY_Z = -0.9326497621158651
H2_DZ_X = -0.974488101132124
H2_DZ_Y = 0.19566526484297242
H2_DZ_Z = 0.10994564514270877
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 383.2148189193936
H3_P_Y = 126.48317942756526
H3_P_Z = 19.804198078910463
# Orientation:
H3_DX_X = -0.6204281964660936
H3_DX_Y = 0.4613161398358443
H3_DX_Z = -0.6342367634856956
H3_DY_X = 0.6991739485292214
H3_DY_Y = -0.04100234974362138
H3_DY_Z = -0.7137748923950191
H3_DZ_X = -0.35528107566813105
H3_DZ_Y = -0.8862878914001158
H3_DZ_Z = -0.2971012131069699
## Properties of helix 4
H4_INID = 1
H4_OUTID = 7
H4_INID2 = 3
H4_OUTID2 = 5
H4_INID2_ORIG = 350
H4_OUTID2_ORIG = 339
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 393.58862627625354
H4_P_Y = 143.68235316846327
H4_P_Z = 24.496576114120266
# Orientation:
H4_DX_X = -0.4856833450313047
H4_DX_Y = -0.06545215386691439
H4_DX_Z = 0.8716809645239287
H4_DY_X = 0.7306803301416949
H4_DY_Y = -0.5777547208443821
H4_DY_Z = 0.3637385567767879
H4_DZ_X = 0.47981032033840165
H4_DZ_Y = 0.8135818939087756
H4_DZ_Z = 0.32843044682329037
## Properties of helix 5
H5_INID = 1
H5_OUTID = 9
H5_INID2 = 3
H5_OUTID2 = 7
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 376.4441101256903
H5_P_Y = 133.52061702893758
H5_P_Z = 38.705152301834154
# Orientation:
H5_DX_X = -0.3836355959510911
H5_DX_Y = -0.5623134013299023
H5_DX_Z = 0.7325485432406964
H5_DY_X = 0.6518166070325719
H5_DY_Y = 0.397046424612995
H5_DY_Z = 0.6461340785770204
H5_DZ_X = -0.654185631388998
H5_DZ_Y = 0.725367338241
H5_DZ_Z = 0.21420407161718202
#############  END of Description of junction: j1