#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 2HS1HS3HS4HS1
FINGERPRINT = 38:61:71:80:109:109:112:118:128:169
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AG
S3_SQLEN2 = 2
S3_SQ = ACAGGG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 341
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 341
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 339
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 339
S4_SQ2 = CAC
S4_SQLEN2 = 3
S4_SQ = CCCACUC
S4_SQLEN = 7
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  348
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  348
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  350
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  350
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GGCAG
S5_SQLEN2 = 5
S5_SQ = GAGGCAGCA
S5_SQLEN = 9
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 115.86653746137148
H1_P_Y = 44.70228542381137
H1_P_Z = 8.924831696528312
# Orientation:
H1_DX_X = -0.13450186239766992
H1_DX_Y = 0.8042500441504146
H1_DX_Z = 0.5788705515878441
H1_DY_X = -0.9434922263819203
H1_DY_Y = 0.07461319396499988
H1_DY_Z = -0.32288587773890143
H1_DZ_X = -0.3028723621733036
H1_DZ_Y = -0.5895886174023346
H1_DZ_Z = 0.7487680511755084
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 131.578635370983
H2_P_Y = 70.7610035507421
H2_P_Z = -0.7854496587848965
# Orientation:
H2_DX_X = 0.8469964210924843
H2_DX_Y = -0.41765604618527163
H2_DX_Z = 0.32887762122318087
H2_DY_X = 0.3247863916130882
H2_DY_Y = -0.08320122212921888
H2_DY_Z = -0.9421206697972113
H2_DZ_X = 0.4208454139936464
H2_DZ_Y = 0.9047878114348578
H2_DZ_Z = 0.06517786280192772
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = 134.1124797634831
H3_P_Y = 50.280865131017514
H3_P_Z = -7.531200816307159
# Orientation:
H3_DX_X = 0.5914809822004372
H3_DX_Y = 0.4681881663360059
H3_DX_Z = -0.6564678884744843
H3_DY_X = -0.24437271217738044
H3_DY_Y = -0.6717746478105937
H3_DY_Z = -0.6992859215671494
H3_DZ_X = -0.7683958779420266
H3_DZ_Y = 0.5740371620913294
H3_DZ_Z = -0.282929516487477
## Properties of helix 4
H4_INID = 1
H4_OUTID = 7
H4_INID2 = 3
H4_OUTID2 = 5
H4_INID2_ORIG = 350
H4_OUTID2_ORIG = 339
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 147.65492027484177
H4_P_Y = 35.48037470107196
H4_P_Z = -2.295622766854618
# Orientation:
H4_DX_X = 0.05967748749478119
H4_DX_Y = 0.5249434174006353
H4_DX_Z = 0.8490424053096768
H4_DY_X = -0.7685435017879172
H4_DY_Y = -0.5186176086028809
H4_DY_Z = 0.37466873622790065
H4_DZ_X = 0.6370082286327943
H4_DZ_Y = -0.6748853121640579
H4_DZ_Z = 0.37249205639761973
## Properties of helix 5
H5_INID = 1
H5_OUTID = 9
H5_INID2 = 3
H5_OUTID2 = 7
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 142.64811147606932
H5_P_Y = 55.56501756549845
H5_P_Z = 11.407349129256371
# Orientation:
H5_DX_X = -0.44839554351403876
H5_DX_Y = 0.5488592560732286
H5_DX_Z = 0.705474984375412
H5_DY_X = 0.20478505112879475
H5_DY_Y = -0.7051915787267262
H5_DY_Z = 0.6787988804698273
H5_DZ_X = 0.8700600665419245
H5_DZ_Y = 0.44884112369039997
H5_DZ_Z = 0.20380659040723081
#############  END of Description of junction: j1