#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 2
LILLEY = HS3HS6
FINGERPRINT = 123
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  3
S1_NAME_ID3 = 14
S1_NUM_ID5_ORIG =  3
S1_NUM_ID3_ORIG = 14
S1_NAME2_ID5 =  5
S1_NAME2_ID3 = 12
S1_NUM2_ID5_ORIG =  5
S1_NUM2_ID3_ORIG = 12
S1_SQ2 = CUAUCGAC
S1_SQLEN2 = 8
S1_SQ = GACUAUCGACAU
S1_SQLEN = 12
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  33
S2_NAME_ID3 = 41
S2_NUM_ID5_ORIG =  33
S2_NUM_ID3_ORIG = 41
S2_NAME2_ID5 =  35
S2_NAME2_ID3 = 39
S2_NUM2_ID5_ORIG =  35
S2_NUM2_ID3_ORIG = 39
S2_SQ2 = GGAUG
S2_SQLEN2 = 5
S2_SQ = AUGGAUGUC
S2_SQLEN = 9
S2_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 9
H1_INID2 = 3
H1_OUTID2 = 7
H1_INID2_ORIG = 5
H1_OUTID2_ORIG = 39
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = 4.678110161146119
H1_P_Y = -26.14389092247705
H1_P_Z = 2.138988946102679
# Orientation:
H1_DX_X = -0.8111957308333642
H1_DX_Y = -0.538412731526563
H1_DX_Z = 0.22819556702055
H1_DY_X = 0.07131634657973596
H1_DY_Y = -0.47840159995537945
H1_DY_Z = -0.875240474310147
H1_DZ_X = 0.5804097388812854
H1_DZ_Y = -0.6937172620673628
H1_DZ_Z = 0.4264749644721464
## Properties of helix 2
H2_INID = 1
H2_OUTID = 12
H2_INID2 = 3
H2_OUTID2 = 10
H2_INID2_ORIG = 35
H2_OUTID2_ORIG = 12
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 0.32950684093620985
H2_P_Y = 7.217376709941561
H2_P_Z = 4.321431531491039
# Orientation:
H2_DX_X = 0.6984591705914505
H2_DX_Y = -0.1834620420489852
H2_DX_Z = -0.6917343898809132
H2_DY_X = -0.6733431601746741
H2_DY_Y = 0.15894082549870703
H2_DY_Z = -0.7220434908201678
H2_DZ_X = 0.2424124082275626
H2_DZ_Y = 0.9700925178131232
H2_DZ_Z = -0.012519234014416014
#############  END of Description of junction: j1