#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS5HS2
FINGERPRINT = 32:64:76:76:106:107:108:117:122:172
LOOP_LENGTH_SUM = 9
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  104
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  104
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  106
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  106
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = CGGACGG
S1_SQLEN2 = 7
S1_SQ = GGCGGACGGGU
S1_SQLEN = 11
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 63
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 63
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 61
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 61
S2_SQ2 = CAAG
S2_SQLEN2 = 4
S2_SQ = UGCAAGUC
S2_SQLEN = 8
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AC
S3_SQLEN2 = 2
S3_SQ = ACACUG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = GA
S4_SQLEN2 = 2
S4_SQ = CAGACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 8
H1_INID2 = 3
H1_OUTID2 = 6
H1_INID2_ORIG = 106
H1_OUTID2_ORIG = 61
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -4.42502270624257
H1_P_Y = 99.17244751342
H1_P_Z = -34.202208628481614
# Orientation:
H1_DX_X = -0.5781543680105523
H1_DX_Y = 0.6751927261722699
H1_DX_Z = 0.4580963973601868
H1_DY_X = 0.8154422282648142
H1_DY_Y = 0.4975061476015128
H1_DY_Z = 0.29587430686223115
H1_DZ_X = -0.028133594026164666
H1_DZ_Y = 0.5446121699179685
H1_DZ_Z = -0.8382160134860328
## Properties of helix 2
H2_INID = 1
H2_OUTID = 11
H2_INID2 = 3
H2_OUTID2 = 9
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = -24.45069633188679
H2_P_Y = 80.00611529798121
H2_P_Z = -9.180329635213454
# Orientation:
H2_DX_X = -0.11870317807691322
H2_DX_Y = -0.6708065799723926
H2_DX_Z = -0.7320710947580107
H2_DY_X = 0.5494556134663462
H2_DY_Y = -0.6584876130590089
H2_DY_Z = 0.514288432961683
H2_DZ_X = -0.8270478126110739
H2_DZ_Y = -0.34119290103049593
H2_DZ_Z = 0.4467430133103729
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -4.9417449165929614
H3_P_Y = 73.69973716744303
H3_P_Z = -19.08742969314805
# Orientation:
H3_DX_X = -0.28380200414672174
H3_DX_Y = -0.7731536709395641
H3_DX_Z = 0.5671770654345707
H3_DY_X = 0.9512687307163747
H3_DY_Y = -0.15262124744540984
H3_DY_Z = 0.2679450630063478
H3_DZ_X = -0.12059943782444105
H3_DZ_Y = 0.6155811530097992
H3_DZ_Z = 0.7787911271037622
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = -2.6982372896143634
H4_P_Y = 63.92098562314585
H4_P_Z = -33.940216558804096
# Orientation:
H4_DX_X = -0.9858392396201499
H4_DX_Y = -0.16763192508592084
H4_DX_Z = 0.004531149648826727
H4_DY_X = -0.1462178266953713
H4_DY_Y = 0.8460459041760799
H4_DY_Z = -0.512666241509379
H4_DZ_X = 0.08210566838917632
H4_DZ_Y = -0.5060690325626211
H4_DZ_Z = -0.8585760266275173
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = -22.86925282351435
H5_P_Y = 71.7419120543497
H5_P_Z = -29.535389254694
# Orientation:
H5_DX_X = -0.7355732636701191
H5_DX_Y = 0.6754960861293
H5_DX_Z = -0.051351839282446576
H5_DY_X = -0.023693920612835484
H5_DY_Y = -0.10140878249083585
H5_DY_Z = -0.9945626460709818
H5_DZ_X = -0.6770307023316455
H5_DZ_Y = -0.7303569650915449
H5_DZ_Z = 0.09059873974062427
#############  END of Description of junction: j1