#############  Start of Description of junction: j1
# Number of strands:
NUM_STRANDS = 5
LILLEY = 3HS2HS4HS1
FINGERPRINT = 36:66:72:81:107:109:115:116:125:173
LOOP_LENGTH_SUM = 7
KISSING_LOOP = FALSE
INTERNAL_HELICES = NULL
## Properties of strand 1
S1_NAME_ID5 =  105
S1_NAME_ID3 = 114
S1_NUM_ID5_ORIG =  105
S1_NUM_ID3_ORIG = 114
S1_NAME2_ID5 =  107
S1_NAME2_ID3 = 112
S1_NUM2_ID5_ORIG =  107
S1_NUM2_ID3_ORIG = 112
S1_SQ2 = GGACGG
S1_SQLEN2 = 6
S1_SQ = GCGGACGGGU
S1_SQLEN = 10
S1_CHAR = A
## Properties of strand 2
S2_NAME_ID5 =  56
S2_NAME_ID3 = 62
S2_NUM_ID5_ORIG =  56
S2_NUM_ID3_ORIG = 62
S2_NAME2_ID5 =  58
S2_NAME2_ID3 = 60
S2_NUM2_ID5_ORIG =  58
S2_NUM2_ID3_ORIG = 60
S2_SQ2 = CAA
S2_SQLEN2 = 3
S2_SQ = UGCAAGU
S2_SQLEN = 7
S2_CHAR = A
## Properties of strand 3
S3_NAME_ID5 =  313
S3_NAME_ID3 = 318
S3_NUM_ID5_ORIG =  313
S3_NUM_ID3_ORIG = 318
S3_NAME2_ID5 =  315
S3_NAME2_ID3 = 316
S3_NUM2_ID5_ORIG =  315
S3_NUM2_ID3_ORIG = 316
S3_SQ2 = AC
S3_SQLEN2 = 2
S3_SQ = ACACUG
S3_SQLEN = 6
S3_CHAR = A
## Properties of strand 4
S4_NAME_ID5 =  335
S4_NAME_ID3 = 340
S4_NUM_ID5_ORIG =  335
S4_NUM_ID3_ORIG = 340
S4_NAME2_ID5 =  337
S4_NAME2_ID3 = 338
S4_NUM2_ID5_ORIG =  337
S4_NUM2_ID3_ORIG = 338
S4_SQ2 = GA
S4_SQLEN2 = 2
S4_SQ = CAGACU
S4_SQLEN = 6
S4_CHAR = A
## Properties of strand 5
S5_NAME_ID5 =  349
S5_NAME_ID3 = 356
S5_NUM_ID5_ORIG =  349
S5_NUM_ID3_ORIG = 356
S5_NAME2_ID5 =  351
S5_NAME2_ID3 = 354
S5_NUM2_ID5_ORIG =  351
S5_NUM2_ID3_ORIG = 354
S5_SQ2 = GCAG
S5_SQLEN2 = 4
S5_SQ = AGGCAGCA
S5_SQLEN = 8
S5_CHAR = A
## Properties of helix 1
H1_INID = 1
H1_OUTID = 7
H1_INID2 = 3
H1_OUTID2 = 5
H1_INID2_ORIG = 107
H1_OUTID2_ORIG = 60
H1_INSEQ_CHAR = A
H1_OUTSEQ_CHAR = A
# Position:
H1_P_X = -10.213248900084258
H1_P_Y = 80.53775062324934
H1_P_Z = -146.1995247840766
# Orientation:
H1_DX_X = 0.30608083047903634
H1_DX_Y = -0.6724648332015448
H1_DX_Z = 0.6738735588524776
H1_DY_X = -0.9498543989815431
H1_DY_Y = -0.2632745418554947
H1_DY_Z = 0.16871021411341758
H1_DZ_X = 0.06396206648224556
H1_DZ_Y = -0.691720726679506
H1_DZ_Z = -0.7193269703919896
## Properties of helix 2
H2_INID = 1
H2_OUTID = 10
H2_INID2 = 3
H2_OUTID2 = 8
H2_INID2_ORIG = 315
H2_OUTID2_ORIG = 112
H2_INSEQ_CHAR = A
H2_OUTSEQ_CHAR = A
# Position:
H2_P_X = 0.7643253070116311
H2_P_Y = 91.7815129375209
H2_P_Z = -118.51449372625582
# Orientation:
H2_DX_X = 0.79494261523094
H2_DX_Y = 0.30620679779194404
H2_DX_Z = -0.5237400457056935
H2_DY_X = -0.2574395550590374
H2_DY_Y = 0.951960249593597
H2_DY_Z = 0.16582086323712986
H2_DZ_X = 0.5493551801710814
H2_DZ_Y = 0.0030133336515092424
H2_DZ_Z = 0.8355835121874406
## Properties of helix 3
H3_INID = 1
H3_OUTID = 6
H3_INID2 = 3
H3_OUTID2 = 4
H3_INID2_ORIG = 337
H3_OUTID2_ORIG = 316
H3_INSEQ_CHAR = A
H3_OUTSEQ_CHAR = A
# Position:
H3_P_X = -4.057463418601
H3_P_Y = 102.96007899209677
H3_P_Z = -137.04102222715113
# Orientation:
H3_DX_X = 0.2555835518614513
H3_DX_Y = 0.7598851814232574
H3_DX_Z = 0.5977052443062689
H3_DY_X = -0.665193360819031
H3_DY_Y = 0.5868547208298338
H3_DY_Z = -0.4616484911293526
H3_DZ_X = -0.7015659917214965
H3_DZ_Y = -0.2795997991649273
H3_DZ_Z = 0.6554609916438778
## Properties of helix 4
H4_INID = 1
H4_OUTID = 6
H4_INID2 = 3
H4_OUTID2 = 4
H4_INID2_ORIG = 351
H4_OUTID2_ORIG = 338
H4_INSEQ_CHAR = A
H4_OUTSEQ_CHAR = A
# Position:
H4_P_X = 5.962243224278477
H4_P_Y = 108.63351259513342
H4_P_Z = -149.79132527868086
# Orientation:
H4_DX_X = 0.7762250295148148
H4_DX_Y = -0.35040338719176134
H4_DX_Z = 0.5241108373228371
H4_DY_X = -0.13356346535442842
H4_DY_Y = -0.9038482330562374
H4_DY_Z = -0.4064716131830721
H4_DZ_X = 0.6161456842965309
H4_DZ_Y = 0.245511380277307
H4_DZ_Z = -0.7483907120462447
## Properties of helix 5
H5_INID = 1
H5_OUTID = 8
H5_INID2 = 3
H5_OUTID2 = 6
H5_INID2_ORIG = 58
H5_OUTID2_ORIG = 354
H5_INSEQ_CHAR = A
H5_OUTSEQ_CHAR = A
# Position:
H5_P_X = 13.783392703946337
H5_P_Y = 92.96825074902057
H5_P_Z = -135.7004263273858
# Orientation:
H5_DX_X = 0.16407900881754856
H5_DX_Y = -0.9331425444312629
H5_DX_Z = 0.3198797752871769
H5_DY_X = 0.46675293033324117
H5_DY_Y = -0.21223602175822975
H5_DY_Z = -0.8585438678911999
H5_DZ_X = 0.8690338203377284
H5_DZ_Y = 0.29017384933959534
H5_DZ_Z = 0.40072354094644425
#############  END of Description of junction: j1