############# Start of Description of junction: j28 # Number of strands: NUM_STRANDS = 2 LILLEY = HS4HS6 FINGERPRINT = 72 LOOP_LENGTH_SUM = 10 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 1804 S1_NAME_ID3 = 1815 S1_NUM_ID5_ORIG = 1804 S1_NUM_ID3_ORIG = 1815 S1_NAME2_ID5 = 1806 S1_NAME2_ID3 = 1813 S1_NUM2_ID5_ORIG = 1806 S1_NUM2_ID3_ORIG = 1813 S1_SQ2 = GACGUAUA S1_SQLEN2 = 8 S1_SQ = UGGACGUAUAGG S1_SQLEN = 12 S1_CHAR = 0 ## Properties of strand 2 S2_NAME_ID5 = 1787 S2_NAME_ID3 = 1796 S2_NUM_ID5_ORIG = 1787 S2_NUM_ID3_ORIG = 1796 S2_NAME2_ID5 = 1789 S2_NAME2_ID3 = 1794 S2_NUM2_ID5_ORIG = 1789 S2_NUM2_ID3_ORIG = 1794 S2_SQ2 = UGCCAA S2_SQLEN2 = 6 S2_SQ = UCUGCCAACA S2_SQLEN = 10 S2_CHAR = 0 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 10 H1_INID2 = 3 H1_OUTID2 = 8 H1_INID2_ORIG = 1806 H1_OUTID2_ORIG = 1794 H1_INSEQ_CHAR = 0 H1_OUTSEQ_CHAR = 0 # Position: H1_P_X = 49.556843527534475 H1_P_Y = 179.06120521292206 H1_P_Z = 117.46087174132197 # Orientation: H1_DX_X = 0.43437264388795427 H1_DX_Y = -0.8628422896571806 H1_DX_Z = 0.25850259074319126 H1_DY_X = -0.8168889824420518 H1_DY_Y = -0.2564545162129548 H1_DY_Z = 0.5166463698495818 H1_DZ_X = -0.3794901798552459 H1_DZ_Y = -0.43558496793752965 H1_DZ_Z = -0.8162431862504604 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 12 H2_INID2 = 3 H2_OUTID2 = 10 H2_INID2_ORIG = 1789 H2_OUTID2_ORIG = 1813 H2_INSEQ_CHAR = 0 H2_OUTSEQ_CHAR = 0 # Position: H2_P_X = 68.5795181230674 H2_P_Y = 170.81773381551739 H2_P_Z = 129.82943721107904 # Orientation: H2_DX_X = -0.9358226729178938 H2_DX_Y = 0.14814498727537284 H2_DX_Z = -0.31982649608497127 H2_DY_X = 0.26790935452801534 H2_DY_Y = -0.29066969758494565 H2_DY_Z = -0.9185508721144515 H2_DZ_X = -0.2290425781578449 H2_DZ_Y = -0.9452852424803098 H2_DZ_Z = 0.2323258654126903 ############# END of Description of junction: j28