############# Start of Description of junction: j13 # Number of strands: NUM_STRANDS = 7 LILLEY = 2HS2HS3HS3HS2HS2HS6 FINGERPRINT = 29:40:41:41:62:64:65:78:91:100:103:106:118:123:130:130:135:142:144:157:164 LOOP_LENGTH_SUM = 18 KISSING_LOOP = FALSE INTERNAL_HELICES = NULL ## Properties of strand 1 S1_NAME_ID5 = 926 S1_NAME_ID3 = 931 S1_NUM_ID5_ORIG = 926 S1_NUM_ID3_ORIG = 931 S1_NAME2_ID5 = 928 S1_NAME2_ID3 = 929 S1_NUM2_ID5_ORIG = 928 S1_NUM2_ID3_ORIG = 929 S1_SQ2 = GA S1_SQLEN2 = 2 S1_SQ = AUGACC S1_SQLEN = 6 S1_CHAR = 0 ## Properties of strand 2 S2_NAME_ID5 = 910 S2_NAME_ID3 = 917 S2_NUM_ID5_ORIG = 910 S2_NUM_ID3_ORIG = 917 S2_NAME2_ID5 = 912 S2_NAME2_ID3 = 915 S2_NUM2_ID5_ORIG = 912 S2_NUM2_ID3_ORIG = 915 S2_SQ2 = AAAC S2_SQLEN2 = 4 S2_SQ = CGAAACAU S2_SQLEN = 8 S2_CHAR = 0 ## Properties of strand 3 S3_NAME_ID5 = 1039 S3_NAME_ID3 = 1047 S3_NUM_ID5_ORIG = 1039 S3_NUM_ID3_ORIG = 1047 S3_NAME2_ID5 = 1041 S3_NAME2_ID3 = 1045 S3_NUM2_ID5_ORIG = 1041 S3_NUM2_ID3_ORIG = 1045 S3_SQ2 = UUCCG S3_SQLEN2 = 5 S3_SQ = GAUUCCGGU S3_SQLEN = 9 S3_CHAR = 0 ## Properties of strand 4 S4_NAME_ID5 = 1067 S4_NAME_ID3 = 1075 S4_NUM_ID5_ORIG = 1067 S4_NUM_ID3_ORIG = 1075 S4_NAME2_ID5 = 1069 S4_NAME2_ID3 = 1073 S4_NUM2_ID5_ORIG = 1069 S4_NUM2_ID3_ORIG = 1073 S4_SQ2 = CAGGA S4_SQLEN2 = 5 S4_SQ = ACCAGGAGG S4_SQLEN = 9 S4_CHAR = 0 ## Properties of strand 5 S5_NAME_ID5 = 1084 S5_NAME_ID3 = 1091 S5_NUM_ID5_ORIG = 1084 S5_NUM_ID3_ORIG = 1091 S5_NAME2_ID5 = 1086 S5_NAME2_ID3 = 1089 S5_NUM2_ID5_ORIG = 1086 S5_NUM2_ID3_ORIG = 1089 S5_SQ2 = AGAG S5_SQLEN2 = 4 S5_SQ = CCAGAGAU S5_SQLEN = 8 S5_CHAR = 0 ## Properties of strand 6 S6_NAME_ID5 = 1265 S6_NAME_ID3 = 1272 S6_NUM_ID5_ORIG = 1265 S6_NUM_ID3_ORIG = 1272 S6_NAME2_ID5 = 1267 S6_NAME2_ID3 = 1270 S6_NUM2_ID5_ORIG = 1267 S6_NUM2_ID3_ORIG = 1270 S6_SQ2 = CCGU S6_SQLEN2 = 4 S6_SQ = GUCCGUAC S6_SQLEN = 8 S6_CHAR = 0 ## Properties of strand 7 S7_NAME_ID5 = 1284 S7_NAME_ID3 = 1295 S7_NUM_ID5_ORIG = 1284 S7_NUM_ID3_ORIG = 1295 S7_NAME2_ID5 = 1286 S7_NAME2_ID3 = 1293 S7_NUM2_ID5_ORIG = 1286 S7_NUM2_ID3_ORIG = 1293 S7_SQ2 = AAUCGAGU S7_SQLEN2 = 8 S7_SQ = GUAAUCGAGUAG S7_SQLEN = 12 S7_CHAR = 0 ## Properties of helix 1 H1_INID = 1 H1_OUTID = 8 H1_INID2 = 3 H1_OUTID2 = 6 H1_INID2_ORIG = 928 H1_OUTID2_ORIG = 915 H1_INSEQ_CHAR = 0 H1_OUTSEQ_CHAR = 0 # Position: H1_P_X = 58.03782253564761 H1_P_Y = 91.92964675552709 H1_P_Z = 81.33764482174965 # Orientation: H1_DX_X = 0.13616128711741737 H1_DX_Y = -0.9881755228553004 H1_DX_Z = 0.07049283594922429 H1_DY_X = 0.24080727390971646 H1_DY_Y = -0.03600849041411891 H1_DY_Z = -0.9699047610205156 H1_DZ_X = 0.9609744849488422 H1_DZ_Y = 0.1490386682969671 H1_DZ_Z = 0.23305689140114794 ## Properties of helix 2 H2_INID = 1 H2_OUTID = 6 H2_INID2 = 3 H2_OUTID2 = 4 H2_INID2_ORIG = 1041 H2_OUTID2_ORIG = 929 H2_INSEQ_CHAR = 0 H2_OUTSEQ_CHAR = 0 # Position: H2_P_X = 41.095102404090866 H2_P_Y = 84.21003801928929 H2_P_Z = 71.3125962328111 # Orientation: H2_DX_X = -0.41330492260899376 H2_DX_Y = 0.4356205467314709 H2_DX_Z = 0.7996335286945708 H2_DY_X = -0.35780488387223386 H2_DY_Y = 0.729821052045537 H2_DY_Z = -0.5825263059024053 H2_DZ_X = -0.8373498110254403 H2_DZ_Y = -0.5268737716536123 H2_DZ_Z = -0.1457714742984848 ## Properties of helix 3 H3_INID = 1 H3_OUTID = 9 H3_INID2 = 3 H3_OUTID2 = 7 H3_INID2_ORIG = 1069 H3_OUTID2_ORIG = 1045 H3_INSEQ_CHAR = 0 H3_OUTSEQ_CHAR = 0 # Position: H3_P_X = 47.538946112680875 H3_P_Y = 90.41235427150936 H3_P_Z = 98.2074763425676 # Orientation: H3_DX_X = -0.19000746537385282 H3_DX_Y = 0.9211209024754368 H3_DX_Z = 0.33975497954416767 H3_DY_X = -0.7615662552429399 H3_DY_Y = -0.3566813007579128 H3_DY_Z = 0.5411056168299098 H3_DZ_X = 0.6196079421516814 H3_DZ_Y = -0.15593182071818035 H3_DZ_Z = 0.7692667062274836 ## Properties of helix 4 H4_INID = 1 H4_OUTID = 9 H4_INID2 = 3 H4_OUTID2 = 7 H4_INID2_ORIG = 1086 H4_OUTID2_ORIG = 1073 H4_INSEQ_CHAR = 0 H4_OUTSEQ_CHAR = 0 # Position: H4_P_X = 33.262753074972004 H4_P_Y = 102.6090548397606 H4_P_Z = 104.48720738803806 # Orientation: H4_DX_X = -0.9817765200697508 H4_DX_Y = 0.17990005154720734 H4_DX_Z = 0.06124406986015174 H4_DY_X = -0.06468847166221536 H4_DY_Y = -0.6193879772392279 H4_DY_Z = 0.7824154492886066 H4_DZ_X = 0.1786904202069337 H4_DZ_Y = 0.7641953317737631 H4_DZ_Z = 0.6197380322535224 ## Properties of helix 5 H5_INID = 1 H5_OUTID = 8 H5_INID2 = 3 H5_OUTID2 = 6 H5_INID2_ORIG = 1267 H5_OUTID2_ORIG = 1089 H5_INSEQ_CHAR = 0 H5_OUTSEQ_CHAR = 0 # Position: H5_P_X = 12.533049362968 H5_P_Y = 97.91522734645527 H5_P_Z = 94.4374914505326 # Orientation: H5_DX_X = -0.14927843165146726 H5_DX_Y = 0.931896653206806 H5_DX_Z = -0.3305821797762576 H5_DY_X = -0.9720768156349298 H5_DY_Y = -0.0770903953529114 H5_DY_Z = 0.22163874988228827 H5_DZ_X = 0.18105969830066293 H5_DZ_Y = 0.35443715759818417 H5_DZ_Z = 0.9173830644638059 ## Properties of helix 6 H6_INID = 1 H6_OUTID = 8 H6_INID2 = 3 H6_OUTID2 = 6 H6_INID2_ORIG = 1286 H6_OUTID2_ORIG = 1270 H6_INSEQ_CHAR = 0 H6_OUTSEQ_CHAR = 0 # Position: H6_P_X = 10.353325075945648 H6_P_Y = 90.5560021294646 H6_P_Z = 73.16235113051643 # Orientation: H6_DX_X = 0.7189873434143088 H6_DX_Y = -0.6468920588985156 H6_DX_Z = 0.2541414254781671 H6_DY_X = -0.6895110579042125 H6_DY_Y = -0.7098502096792458 H6_DY_Z = 0.14383038916078306 H6_DZ_X = 0.08735960758746408 H6_DZ_Y = -0.2786455525436935 H6_DZ_Z = -0.9564125443603189 ## Properties of helix 7 H7_INID = 1 H7_OUTID = 12 H7_INID2 = 3 H7_OUTID2 = 10 H7_INID2_ORIG = 912 H7_OUTID2_ORIG = 1293 H7_INSEQ_CHAR = 0 H7_OUTSEQ_CHAR = 0 # Position: H7_P_X = 31.2095146208295 H7_P_Y = 100.54297291950235 H7_P_Z = 77.88679318322711 # Orientation: H7_DX_X = 0.9552903123272465 H7_DX_Y = -0.23454066775319404 H7_DX_Z = -0.18003081498345352 H7_DY_X = -0.28657416544821857 H7_DY_Y = -0.8843390791579537 H7_DY_Z = -0.3685371633522436 H7_DZ_X = -0.07277133275802328 H7_DZ_Y = 0.40365216244180147 H7_DZ_Z = -0.9120138512570293 ############# END of Description of junction: j13