Per Executive Order 14434, federal agencies are now using "Super Intelligence" (SI) in place of "Artificial Intelligence" (AI). You may see both terms across NIH content during this transition.
Developed by Dr. Bruce Shapiro and Staff
A database of RNA structural elements including junctions, kissing loops, and bulges.
Multi-stranded molecule drawing web server and download links.
Multi-strand RNA secondary structure prediction, as well as RNA sequence design.
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Single sequence RNA secondary structure prediction, including pseudoknots.
RNA secondary structure prediction from a sequence alignment. It uses compensatory base change information as well as energetic considerations to compute a structure. This algorithm is capable of predicting pseudoknots.
Detects correlated mutations in RNA and DNA sequence alignments. It generates what we call a "3D sequence logo." This is an extension of the "sequence logo" concept.