RNA Structure and Design Tools

Developed by Dr. Bruce Shapiro and Staff

RNA Junction Database

A database of RNA structural elements including junctions, kissing loops, and bulges.

RiboSketch

Multi-stranded molecule drawing web server and download links.

NanoFolder

Multi-strand RNA secondary structure prediction, as well as RNA sequence design.

*** COMING SOON ***

CyloFold

Single sequence RNA secondary structure prediction, including pseudoknots.

KNetFold

RNA secondary structure prediction from a sequence alignment. It uses compensatory base change information as well as energetic considerations to compute a structure. This algorithm is capable of predicting pseudoknots.

CorreLogo

Detects correlated mutations in RNA and DNA sequence alignments. It generates what we call a "3D sequence logo." This is an extension of the "sequence logo" concept.

For technical support, please contact ccrostr@nih.gov.