RNAJunction Database - Junction Profile:10406
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10406: 2D1A_j2_A-G6_B-A31

Primary Citation: (from PDB entry 2D1A)

S.BABA K.TAKAHASHI S.NOGUCHI H.TAKAKU Y.KOYANAGI N.YAMAMOTO G.KAWAI SOLUTION RNA STRUCTURES OF THE HIV-1 DIMERIZATION INITIATION SITE IN THE KISSING-LOOP AND EXTENDED-DUPLEX DIMERS J.BIOCHEM.(TOKYO) V. 138 583 2005

Experimental Method: NMR

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:2D1A j2 A-A31 B-G6 
NC-IUBMB Classification:2HS2Cluster Page
Angles: 154°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.50231Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: UCGGCU 6nt

Strand 2: Chain B: AGAGGCGA 8nt

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