RNAJunction Database - Junction Profile:10498
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 10498: 2E5L_j5_A-C36_A-C403_A-C436_A-U495_A-C545

Primary Citation: (from PDB entry 2E5L)

T.KAMINISHI D.N.WILSON C.TAKEMOTO J.M.HARMS M.KAWAZOE F.SCHLUENZEN K.HANAWA-SUETSUGU M.SHIROUZU P.FUCINI S.YOKOYAMA RIKEN STRUCTURAL GENOMICS/PROTEO A SNAPSHOT OF THE 30S RIBOSOMAL SUBUNIT CAPTURING MRNA VIA THE SHINE-DALGARNO INTERACTION STRUCTURE V. 15 289 2007

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:5-wayCluster:2F4V j5 A-C36 A-C403 A-C436 A-U495 A-C545 
NC-IUBMB Classification:Cluster Page
Angles: 8:52:53:82:90:96:100:106:133:140°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.88457Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: GCUUGG 6nt

Strand 2: Chain A: GCUGGC 6nt

Strand 3: Chain A: CCUGAA 6nt

Strand 4: Chain A: GUAAUAGC 8nt

Strand 5: Chain A: GCGAGC 6nt

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