RNAJunction Database - Junction Profile:12454
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 12454: 2OTJ_j5_0-A912_0-G1071_0-A1088_0-C1267_0-G1290

Primary Citation: (from PDB entry 2OTJ)

G.BLAHA S.J.SCHROEDER J.TIRADO-RIVES THE STRUCTURES OF ANTIBIOTICS BOUND TO THE E SITE REGION OF THE 50 S RIBOSOMAL SUBUNIT OF HALOARCULA MARISMORTUI: 13-DEOXYTEDANOLIDE AND GIRODAZOLE. J.MOL.BIOL. V. 367 1471 2007

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:1JJ2 j5 0-A912 0-G1071 0-A1088 0-C1267 0-G1290 
NC-IUBMB Classification:Cluster Page
Angles: 11:42:47:53:124:127:133:136:169:180°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.74752Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: AGGA 4nt

Strand 2: Chain 0: GAAA 4nt

Strand 3: Chain 0: GAGA 4nt

Strand 4: Chain 0: UCCG 4nt

Strand 5: Chain 0: CGAGUA 6nt

Valid XHTML 1.0 Transitional