RNAJunction Database - Junction Profile:172
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 172: 1DUQ_j2_C-G204_D-G224

Primary Citation: (from PDB entry 1DUQ)

L.-W.HUNG E.L.HOLBROOK S.R.HOLBROOK THE CRYSTAL STRUCTURE OF THE REV BINDING ELEMENT OF HIV-1 REVEALS NOVEL BASE PAIRING AND CONFORMATIONAL VARIABILITY PROC.NAT.ACAD.SCI.USA V. 97 5107 2000

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:Bulge LoopCluster:1DUQ j2 G-G404 H-G424 
NC-IUBMB Classification:HS1HS2Cluster Page
Angles: 166°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.75439Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain C: CUGGGCG 7nt

Strand 2: Chain D: CGGUACAG 8nt

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