RNAJunction Database - Junction Profile:2059
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 2059: 1K01_j5_A-G47_A-G115_A-C128_A-U142_A-A153

Primary Citation: (from PDB entry 1K01)

F.SCHLUENZEN R.ZARIVACH J.HARMS A.BASHAN A.TOCILJ R.ALBRECHT A.YONATH F.FRANCESCHI STRUCTURAL BASIS FOR THE INTERACTION OF ANTIBIOTICS WITH THE PEPTIDYL TRANSFERASE CENTRE IN EUBACTERIA NATURE V. 413 814 2001

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:5-wayCluster:1JZZ j5 A-G47 A-G115 A-C128 A-U142 A-A153 
NC-IUBMB Classification:Cluster Page
Angles: 29:69:78:85:103:104:128:153:153:169°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.71002Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CGAAUGG 7nt

Strand 2: Chain A: CGAUGAAG 8nt

Strand 3: Chain A: CCAC 4nt

Strand 4: Chain A: GUAUC 5nt

Strand 5: Chain A: GAUG 4nt

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