RNAJunction Database - Junction Profile:2411
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 2411: 1K9W_j4_C-G7_C-C15_D-G7_D-C15

Primary Citation: (from PDB entry 1K9W)

E.ENNIFAR P.WALTER B.EHRESMANN C.EHRESMANN P.DUMAS CRYSTAL STRUCTURES OF COAXIALLY-STACKED KISSING COMPLEXES OF THE HIV-1 RNA DIMERIZATION INITIATION SITE NAT.STRUCT.BIOL. V. 8 1064 2001

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

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Derived Information
Type:4-wayCluster:1K9W j4 A-G7 A-C15 B-G7 B-C15 
NC-IUBMB Classification:Cluster Page
Angles: 6:8:167:170:171:176°
Fit Criteria: C
Extracted Structure:Download
Minimized Structure:Download RMSD = 0.74419Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain C: UGAGGU 6nt

Strand 2: Chain C: ACACA 5nt

Strand 3: Chain D: ACACA 5nt

Strand 4: Chain D: UGAGGU 6nt

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