RNAJunction Database - Junction Profile:4218

Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4218: 1NKW_j4_0-C1283_0-U1307_0-G1662_0-G1992

Primary Citation: (from PDB entry 1NKW)

J.M.HARMS F.SCHLUENZEN R.ZARIVACH A.BASHAN S.GAT I.AGMON H.BARTELS F.FRANCESCHI A.YONATH HIGH RESOLUTION STRUCTURE OF THE LARGE RIBOSOMAL SUBUNIT FROM A MESOPHILIC EUBACTERIUM CELL (CAMBRIDGE,MASS.) V. 107 679 2001

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:4-wayCluster:1J5A j4 A-C1283 A-U1307 A-G1662 A-G1992 
NC-IUBMB Classification:Cluster Page
Angles: 32:49:135:139:152:170°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.02343Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: CUUCGC 6nt

Strand 2: Chain 0: AACGAUAAAAG 11nt

Strand 3: Chain 0: GCGCGCGA 8nt

Strand 4: Chain 0: UCGGUG 6nt

Valid XHTML 1.0 Transitional