RNAJunction Database - Junction Profile:4304
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4304: 1P5O_j2_A-G5_A-C72

Primary Citation: (from PDB entry 1P5O)

P.J.LUKAVSKY I.KIM G.A.OTTO J.D.PUGLISI STRUCTURE OF HCV IRES DOMAIN II DETERMINED BY NMR. NAT.STRUCT.BIOL. V. 10 1033 2003

Experimental Method:

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1P5M j2 A-G5 A-C50 
NC-IUBMB Classification:2HS1Cluster Page
Angles: 152°
Fit Criteria: A
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.26682Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain A: CUGUGAG 7nt

Strand 2: Chain A: CUCCAG 6nt

Valid XHTML 1.0 Transitional