RNAJunction Database - Junction Profile:4509
Links: Download Junction Jmol Scanner Output PDB SCOR MMDB

Entry # 4509: 1PNU_j2_0-C1221_0-G1246

Primary Citation: (from PDB entry 1PNU)

A.VILA-SANJURJO W.K.RIDGEWAY V.SEYMANER W.ZHANG S.SANTOSO K.YU J.H.D.CATE X-RAY CRYSTAL STRUCTURES OF THE WT AND A HYPER-ACCURATE RIBOSOME FROM ESCHERICHIA COLI PROC.NAT.ACAD.SCI.USA V. 100 8682 2003

Experimental Method: X-RAY_DIFFRACTION

Structure Images
3d structure of junction secondary structure of junction

Click to launch 3D viewer Jmol | Larger 3D image | Created with Raster3D and RNAView

Derived Information
Type:Bulge LoopCluster:1PNY j2 0-C1221 0-G1246 
NC-IUBMB Classification:HS4HS7Cluster Page
Angles: 37°
Fit Criteria: B
Extracted Structure:Download
Minimized Structure:Download RMSD = 1.14317Å

For more detailed information view the raw JunctionScanner output.

Sequence

Strand 1: Chain 0: CGCGGAGAAGCCA 13nt

Strand 2: Chain 0: UGGUGGAGCC 10nt

Valid XHTML 1.0 Transitional